Mercurial > repos > peterjc > blast_rbh
changeset 26:1ffbedc428d1 draft
planemo upload for repository https://github.com/peterjc/galaxy_blast/tree/master/tools/blast_rbh commit e03b3d1afe99ff120e73e9cfc25a1cf0a2ab998e-dirty
| author | peterjc |
|---|---|
| date | Tue, 14 Mar 2017 13:57:33 -0400 |
| parents | 8b34c3e1d20b |
| children | f2693e05e16b |
| files | tools/blast_rbh/README.rst tools/blast_rbh/blast_rbh.py |
| diffstat | 2 files changed, 5 insertions(+), 2 deletions(-) [+] |
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--- a/tools/blast_rbh/README.rst Thu Feb 09 11:21:58 2017 -0500 +++ b/tools/blast_rbh/README.rst Tue Mar 14 13:57:33 2017 -0400 @@ -89,6 +89,7 @@ - PEP8 style updates to the Python script (internal change only). - Fix parameter help text which was not being displayed. v0.1.10 - Updated to depend on NCBI BLAST+ 2.5.0 via ToolShed or BioConda. +v0.1.11 - Tweak Python script to work under Python 2 or Python 3. ======= ======================================================================
--- a/tools/blast_rbh/blast_rbh.py Thu Feb 09 11:21:58 2017 -0500 +++ b/tools/blast_rbh/blast_rbh.py Tue Mar 14 13:57:33 2017 -0400 @@ -18,6 +18,8 @@ # results, rather than doing minimum HSP coverage in Python. # [Not doing this right now as would break on older BLAST+] +from __future__ import print_function + import os import shutil import sys @@ -34,7 +36,7 @@ if "--version" in sys.argv[1:]: # TODO - Capture version of BLAST+ binaries too? - print "BLAST RBH v0.1.10" + print("BLAST RBH v0.1.11") sys.exit(0) try: @@ -362,7 +364,7 @@ outfile.write("%s\t%s\t%i\t%i\t%s\t%s\t%i\t%s\t%s\n" % tuple(values)) count += 1 outfile.close() -print "Done, %i RBH found" % count +print("Done, %i RBH found" % count) if tie_warning: sys.stderr.write("Warning: Sequences with tied best hits found, you may have duplicates/clusters\n")