Mercurial > repos > peterjc > blast_rbh
changeset 41:38fe3aaa15aa draft
"planemo upload for repository https://github.com/peterjc/galaxy_blast/tree/master/tools/blast_rbh commit eb20367d88fc595a7d274321494ef98e919f4747-dirty"
| author | peterjc |
|---|---|
| date | Thu, 10 Sep 2020 11:13:56 +0000 |
| parents | ddbdf5e7296a |
| children | 2bca27f8abb2 |
| files | test-data/rbh_blastn_three_human_mRNA_vs_rhodopsin_nucs.tabular tools/blast_rbh/README.rst tools/blast_rbh/blast_rbh.xml |
| diffstat | 3 files changed, 5 insertions(+), 4 deletions(-) [+] |
line wrap: on
line diff
--- a/test-data/rbh_blastn_three_human_mRNA_vs_rhodopsin_nucs.tabular Thu Aug 20 20:15:11 2020 +0000 +++ b/test-data/rbh_blastn_three_human_mRNA_vs_rhodopsin_nucs.tabular Thu Sep 10 11:13:56 2020 +0000 @@ -1,2 +1,2 @@ #A_id B_id A_length B_length A_qcovhsp B_qcovhsp length pident bitscore -ENA|BC112106|BC112106.1 gi|57163782|ref|NM_001009242.1| 1213 1047 86 100 1047 92.073 1514 +ENA|BC112106|BC112106.1 gi|57163782|ref|NM_001009242.1| 1213 1047 86 100 1047 92.073 1515
--- a/tools/blast_rbh/README.rst Thu Aug 20 20:15:11 2020 +0000 +++ b/tools/blast_rbh/README.rst Thu Sep 10 11:13:56 2020 +0000 @@ -95,6 +95,7 @@ v0.1.12 - Use ``<command detect_errors="aggressive">`` (internal change only). - Single quote command line arguments (internal change only). v0.2.0 - Refactored to use more than one Python file (internal change only). +v0.3.0 - Updated to BLAST+ 2.9.0 via conda; removed legacy tool packages. ======= ======================================================================
--- a/tools/blast_rbh/blast_rbh.xml Thu Aug 20 20:15:11 2020 +0000 +++ b/tools/blast_rbh/blast_rbh.xml Thu Sep 10 11:13:56 2020 +0000 @@ -1,8 +1,8 @@ -<tool id="blast_reciprocal_best_hits" name="BLAST Reciprocal Best Hits (RBH)" version="0.2.0"> +<tool id="blast_reciprocal_best_hits" name="BLAST Reciprocal Best Hits (RBH)" version="0.3.0"> <description>from two FASTA files</description> <requirements> - <requirement type="package" version="1.67">biopython</requirement> - <requirement type="package" version="2.5.0">blast</requirement> + <requirement type="package" version="1.77">biopython</requirement> + <requirement type="package" version="2.9.0">blast</requirement> </requirements> <version_command> python $__tool_directory__/blast_rbh.py --version