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1 <tool id="remove_degenerate_values" name="Remove Degenerate Values" force_history_refresh="True">
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2 <command interpreter="python">remove.degenerate.values.py
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3 -d $dataset -r ${replacement_value}
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4 -o ${output}
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5
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6 </command>
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7 <inputs>
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8 <param name="dataset" type="data" format='tabular' label="Matrix with Degenerate Values"/>
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9 <param name="replacement_value" type="text" label="Value used to replace NaNs and Infs in matrix" value="NA" />
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10 </inputs>
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11 <outputs>
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12 <data format="tabular" name="output" label="Matrix with degenerate values (NaNs and Infs) replaced"/>
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13 </outputs>
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14 <help>
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15 .. class:: infomark
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16
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17 **Remove Degenerate Values** - Tool to replace 'degenerate' values (such as NaNs and Infs) from a data matrix with a user-specified value. **Note**, NAs are not degenerate values.
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18
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19 **OUTPUT:** A new matrix without degenerate values
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20
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21 ----
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22
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23 **Parameters**
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24
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25 - **Matrix with Degenerate Values** Input matrix that potentially contains degenerate values
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26
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27 - **Value used to replace NaNs and Infs in matrix** Single value that is used to replace the degenerate values
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28
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29 </help>
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30 </tool>
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