diff cluster.tools/remove.degenerate.values.xml @ 0:0decf3fd54bc draft

Uploaded

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/cluster.tools/remove.degenerate.values.xml	Thu Feb 28 01:45:39 2013 -0500
@@ -0,0 +1,30 @@
+<tool id="remove_degenerate_values" name="Remove Degenerate Values" force_history_refresh="True">
+    <command interpreter="python">remove.degenerate.values.py
+-d $dataset -r ${replacement_value}
+-o ${output}
+
+</command>
+    <inputs>
+    	<param name="dataset" type="data" format='tabular' label="Matrix with Degenerate Values"/>
+	<param name="replacement_value" type="text" label="Value used to replace NaNs and Infs in matrix" value="NA" />
+    </inputs>
+    <outputs>
+        <data format="tabular" name="output" label="Matrix with degenerate values (NaNs and Infs) replaced"/>
+    </outputs>
+<help>
+.. class:: infomark
+     
+**Remove Degenerate Values** - Tool to replace 'degenerate' values (such as NaNs and Infs) from a data matrix with a user-specified value.  **Note**, NAs are not degenerate values.
+
+**OUTPUT:**  A new matrix without degenerate values
+
+----
+
+**Parameters**
+
+- **Matrix with Degenerate Values** Input matrix that potentially contains degenerate values
+
+- **Value used to replace NaNs and Infs in matrix** Single value that is used to replace the degenerate values
+
+</help>
+</tool>