Mercurial > repos > pavanvidem > blockclust

changeset 0:daa913e85b5a draft

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Uploaded
author pavanvidem
date Mon, 19 Aug 2013 11:47:18 -0400
parents
children 05c89fe76736
files tool_dependencies.xml
diffstat 1 files changed, 64 insertions(+), 0 deletions(-) [+]
line wrap: on
line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Mon Aug 19 11:47:18 2013 -0400
@@ -0,0 +1,64 @@
+<?xml version="1.0"?>
+<tool_dependency>
+
+   <package name="blockbuster" version="1.0">
+        <install version="1.0">
+            <actions>
+                <action type="download_by_url">http://www.bioinf.uni-leipzig.de/~david/LIFE/blockbuster.tar.gz</action>
+                <action type="shell_command">make</action>
+                <action type="move_file">
+                    <source>blockbuster.x</source>
+                    <destination>$INSTALL_DIR/bin</destination>
+                </action>
+                <action type="set_environment">
+                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
+                </action>
+            </actions>
+        </install>
+        <readme>
+	
+        </readme>
+    </package>
+
+   <package name="EDeN" version="1.0">
+        <install version="1.0">
+            <actions>
+                <action type="download_by_url">http://www.bioinf.uni-freiburg.de/~costa/EDeN.tgz</action>
+                <action type="shell_command">make</action>
+                <action type="move_file">
+                    <source>EDeN</source>
+                    <destination>$INSTALL_DIR/bin</destination>
+                </action>
+                <action type="set_environment">
+                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
+                </action>
+            </actions>
+        </install>
+        <readme>
+	
+        </readme>
+    </package>
+
+
+
+<!--
+    <package name="BEDTools" version="1.0">
+        <install version="1.0">
+            <actions>
+                <action type="download_by_url">http://bedtools.googlecode.com/files/BEDTools.v2.17.0.tar.gz</action>
+                <action type="shell_command">make</action>
+                <action type="move_file">
+                    <source>bin/bamToBed</source>
+                    <destination>$INSTALL_DIR/bin</destination>
+                </action>
+                <action type="set_environment">
+                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
+                </action>
+            </actions>
+        </install>
+        <readme>
+	
+        </readme>
+    </package>
+-->
+</tool_dependency>