Mercurial > repos > pavanvidem > blockclust

annotate tool_dependencies.xml @ 1:05c89fe76736 draft default tip

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author pavanvidem
date Tue, 20 Aug 2013 04:34:09 -0400
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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3
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4 <package name="blockbuster" version="1.0">
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5 <install version="1.0">
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6 <actions>
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7 <action type="download_by_url">http://www.bioinf.uni-leipzig.de/~david/LIFE/blockbuster.tar.gz</action>
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8 <action type="shell_command">make</action>
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9 <action type="move_file">
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10 <source>blockbuster.x</source>
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11 <destination>$INSTALL_DIR/bin</destination>
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12 </action>
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13 <action type="set_environment">
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14 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
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15 </action>
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16 </actions>
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17 </install>
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18 <readme>
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19
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20 </readme>
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21 </package>
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22
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23 <package name="EDeN" version="1.0">
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24 <install version="1.0">
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25 <actions>
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26 <action type="download_by_url">http://www.bioinf.uni-freiburg.de/~costa/EDeN.tgz</action>
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27 <action type="shell_command">make</action>
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28 <action type="move_file">
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29 <source>EDeN</source>
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30 <destination>$INSTALL_DIR/bin</destination>
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31 </action>
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32 <action type="set_environment">
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33 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
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34 </action>
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35 </actions>
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36 </install>
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37 <readme>
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38
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39 </readme>
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40 </package>
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41
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42 <package name="BlockClust" version="1.0">
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43 <install version="1.0">
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44 <actions>
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45 <action type="download_by_url">wget http://132.230.153.87/BlockClust.tar.gz</action>
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46 <action type="shell_command">make</action>
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47 <action type="move_file">
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48 <source>BlockClust</source>
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49 <destination>$INSTALL_DIR/bin</destination>
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50 </action>
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51 <action type="set_environment">
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52 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
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53 </action>
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54 </actions>
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55 </install>
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56 <readme>
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57
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58 </readme>
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59 </package>
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60
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61 <!--
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62 <package name="BEDTools" version="1.0">
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63 <install version="1.0">
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64 <actions>
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65 <action type="download_by_url">http://bedtools.googlecode.com/files/BEDTools.v2.17.0.tar.gz</action>
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66 <action type="shell_command">make</action>
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67 <action type="move_directory_files">
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68 <source_directory>bin</source_directory>
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69 <destination_directory>$INSTALL_DIR/bin</destination_directory>
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70 </action>
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71 <action type="set_environment">
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72 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
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73 </action>
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74 </actions>
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75 </install>
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76 <readme>
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77
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78 </readme>
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79 </package>
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80 -->
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81 </tool_dependency>