Mercurial > repos > p.lucas > taxid_genusexpand_taxid2acc

changeset 4:9aed02bbc85c draft

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Deleted selected files wrong file uploaded
author p.lucas
date Mon, 13 Mar 2023 13:22:36 +0000
parents 4a907a27ca5a
children b53e594a8042
files MEGABLAST_TAB_get_taxid_acc.xml
diffstat 1 files changed, 0 insertions(+), 23 deletions(-) [+]
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line diff
--- a/MEGABLAST_TAB_get_taxid_acc.xml	Mon Mar 13 13:20:51 2023 +0000
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,23 +0,0 @@
-<tool id="MEGABLAST_TAB_get_taxid_acc" name="Get taxid and acc from megablast" version="1">
-  <description>
-    From a megablast file of results (tabular 25 columns) and taxid(s) user is interested in, 
-    provide 1 file with 2 columns: taxids accfrom taxonomic profile
-  </description>
-  <requirements>
-    <requirement type="package" version="2.7">python</requirement>
-    <requirement type="package">krona</requirement>
-  </requirements>
-  <command detect_errors="exit_code"><![CDATA[
-    python2 '$__tool_directory__/MEGABLAST_TAB_get_taxid_acc.py' -r ${input} -o ${output}
-  ]]></command>
-  <inputs>
-    <param format="tsv,tabular" name="input" type="data" label="Select your megablast file."/>
-  </inputs> 
-  <outputs>
-    <data name="output" format="tsv" />
-  </outputs>
-  <help>
-  From a megablast file of results (tabular 25 columns) and taxid(s) user is interested in,
-  provide 1 file with 2 columns: taxids acc
-  </help>
-</tool>