Mercurial > repos > nilesh > sickle_dev
changeset 3:13837e38aad2
depending on zlib dependency
| author | nilesh |
|---|---|
| date | Mon, 15 Jul 2013 11:08:48 -0500 |
| parents | b04d24abd573 |
| children | 4ce18088b3f2 |
| files | tool_dependencies.xml |
| diffstat | 1 files changed, 8 insertions(+), 16 deletions(-) [+] |
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--- a/tool_dependencies.xml Mon Jul 15 10:47:42 2013 -0500 +++ b/tool_dependencies.xml Mon Jul 15 11:08:48 2013 -0500 @@ -1,26 +1,18 @@ <?xml version="1.0"?> <tool_dependency> <package name="zlib" version="1.2.8"> + <repository changeset_revision="6d14a9059f07" name="zlib" owner="nilesh" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" /> + </package> + <package name="sickle" version="1.21.0"> <install version="1.0"> <actions> - <action type="download_by_url">http://zlib.net/zlib-1.2.8.tar.gz</action> - <action type="shell_command">./configure --prefix=$INSTALL_DIR/zlib</action> - <action type="shell_command">make</action> - <action type="shell_command">make install prefix=$INSTALL_DIR/zlib</action> - <action type="set_environment"> - <environment_variable name="ZLIB_PATH" action="set_to">$INSTALL_DIR/zlib/lib</environment_variable> + <action type="set_environment_for_install"> + <repository changeset_revision="6d14a9059f07" name="zlib" owner="nilesh" toolshed="http://testtoolshed.g2.bx.psu.edu"> + <package name="zlib" version="1.2.8" /> + </repository> </action> - </actions> - </install> - <readme> - Sickle requires a C compiler; GCC or clang are recommended. Sickle relies on Heng Li's kseq.h, which is bundled with the source. It also requires zlib, which is included in this repo. - </readme> - </package> - <package name="sickle" version="1.21.0"> - <install version="1.0"> - <actions> <action type="shell_command">git clone https://github.com/najoshi/sickle.git</action> - <action type="shell_command">make LIBS="-L$ENV[ZLIB_PATH] -lz"</action> + <action type="shell_command">make LIBS="-L$ZLIB_PATH -lz"</action> <action type="move_file"> <source>sickle</source> <destination>$INSTALL_DIR/bin</destination>