# HG changeset patch # User nilesh # Date 1373904528 18000 # Node ID 13837e38aad2ccd0947b13a03774ef5eb1659b94 # Parent b04d24abd5734b4c0a7a4e3f61aae88416233745 depending on zlib dependency diff -r b04d24abd573 -r 13837e38aad2 tool_dependencies.xml --- a/tool_dependencies.xml Mon Jul 15 10:47:42 2013 -0500 +++ b/tool_dependencies.xml Mon Jul 15 11:08:48 2013 -0500 @@ -1,26 +1,18 @@ + + + - http://zlib.net/zlib-1.2.8.tar.gz - ./configure --prefix=$INSTALL_DIR/zlib - make - make install prefix=$INSTALL_DIR/zlib - - $INSTALL_DIR/zlib/lib + + + + - - - - Sickle requires a C compiler; GCC or clang are recommended. Sickle relies on Heng Li's kseq.h, which is bundled with the source. It also requires zlib, which is included in this repo. - - - - - git clone https://github.com/najoshi/sickle.git - make LIBS="-L$ENV[ZLIB_PATH] -lz" + make LIBS="-L$ZLIB_PATH -lz" sickle $INSTALL_DIR/bin