Mercurial > repos > nilesh > rseqc_dev2

changeset 6:e994caf2503d

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Lance's updates
author nilesh
date Wed, 02 Oct 2013 02:09:28 -0400
parents dc3b3b88fbab
children bc65a465caed
files bam2wig.xml
diffstat 1 files changed, 1 insertions(+), 3 deletions(-) [+]
line wrap: on
line diff
--- a/bam2wig.xml	Thu Jul 18 11:27:43 2013 -0500
+++ b/bam2wig.xml	Wed Oct 02 02:09:28 2013 -0400
@@ -3,12 +3,10 @@
 		converts all types of RNA-seq data from .bam to .wig 
 	</description>
 	<requirements>
-		<requirement type="package" version="2.15.1">R</requirement>
-		<requirement type="package" version="0.1.18">samtools</requirement>
 		<requirement type="package" version="2.3.7">rseqc</requirement>
 	</requirements>
 	<command interpreter="python"> 
-		samtoolshelper.py /home/nilesh/RSeQC-2.3.3/scripts/bam2wig.py -i $input -s $chromsize -o outfile
+		samtoolshelper.py bam2wig.py -i $input -s $chromsize -o outfile
 
 		#if str($strand_type.strand_specific) == "pair"
 			-d