Mercurial > repos > nilesh > mutect
changeset 4:7590067ab75d default tip
made changes
| author | nilesh |
|---|---|
| date | Wed, 17 Jul 2013 13:21:45 -0500 |
| parents | 50a1971f6a7d |
| children | |
| files | muTect.xml |
| diffstat | 1 files changed, 2 insertions(+), 3 deletions(-) [+] |
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--- a/muTect.xml Wed Jul 17 13:07:51 2013 -0500 +++ b/muTect.xml Wed Jul 17 13:21:45 2013 -0500 @@ -29,8 +29,8 @@ <param name="dbsnp" type="data" format="vcf" label="dbsnp.vcf file" /> <param name="intervals" type="text" label="Intervals to process" help="In format 'chr1:1500-2500; chr2:2500-3500', separated by semicolons" optional="true"/> <param name="intervalfile" type="data" format="txt" label="Intervals to process (.txt file)" help="'chr1:1500-2500', one entry per line" optional="true"/> - <param name="normal" type="bam" label="Normal BAM file"/> - <param name="tumor" type="bam" label="Tumor BAM file"/> + <param name="normal" type="data" format="bam" label="Normal BAM file"/> + <param name="tumor" type="data" format="bam" label="Tumor BAM file"/> <conditional name="cosmic"> <param name="has_cosmic" type="boolean" label="Cosmic vcf file available for specimen" value="false" /> <when value="true"> @@ -44,7 +44,6 @@ <outputs> <data format="txt" name="callstats" label="Detailed caller output" from_work_dir="call_stats.txt"/> <data format="txt" name="coverage" label="Filename for coverage output" from_work_dir="coverage.wig.txt"/> - </data> </outputs>