Mercurial > repos > nilesh > mutect

changeset 3:50a1971f6a7d

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fixed again
author nilesh
date Wed, 17 Jul 2013 13:07:51 -0500
parents a4e511091a2f
children 7590067ab75d
files muTect.xml tool_dependencies.xml
diffstat 2 files changed, 4 insertions(+), 3 deletions(-) [+]
line wrap: on
line diff
--- a/muTect.xml	Wed Jul 17 12:42:48 2013 -0500
+++ b/muTect.xml	Wed Jul 17 13:07:51 2013 -0500
@@ -1,7 +1,7 @@
 <tool id="muTect" name="muTect" version="1.0.0">
   <description>identify somatic point mutations</description>
   <requirements>
-  		<requirement type="set_environment" version="1.0">MUTECTPATH</requirement>
+  		<requirement type="set_environment">MUTECTPATH</requirement>
   </requirements>
   <command interpreter="java">
   	-Xmx2g -jar \$MUTECTPATH/muTect-1.1.1.jar
@@ -46,7 +46,8 @@
 	<data format="txt" name="coverage" label="Filename for coverage output" from_work_dir="coverage.wig.txt"/>
   	</data>
   </outputs>
-  	
+
+
   <help> 
 
 .. class:: infomark
--- a/tool_dependencies.xml	Wed Jul 17 12:42:48 2013 -0500
+++ b/tool_dependencies.xml	Wed Jul 17 13:07:51 2013 -0500
@@ -1,6 +1,6 @@
 <?xml version="1.0"?>
 <tool_dependency>
     <set_environment version="1.0">
-        <environment_variable name="MUTECTPATH" action="set_to">$REPOSITORY_INSTALL_DIR</environment_variable>
+        <environment_variable name="MUTECTPATH" action="set_to">$REPOSITORY_INSTALL_DIR</environment_variable>   
     </set_environment>
 </tool_dependency>