# HG changeset patch
# User nilesh
# Date 1374084471 18000
# Node ID 50a1971f6a7dff6d3c60ed222ab1b95aa1615452
# Parent  a4e511091a2f3ab93d33a1bd13953857aaef3eb7
fixed again

diff -r a4e511091a2f -r 50a1971f6a7d muTect.xml
--- a/muTect.xml	Wed Jul 17 12:42:48 2013 -0500
+++ b/muTect.xml	Wed Jul 17 13:07:51 2013 -0500
@@ -1,7 +1,7 @@
 <tool id="muTect" name="muTect" version="1.0.0">
   <description>identify somatic point mutations</description>
   <requirements>
-  		<requirement type="set_environment" version="1.0">MUTECTPATH</requirement>
+  		<requirement type="set_environment">MUTECTPATH</requirement>
   </requirements>
   <command interpreter="java">
   	-Xmx2g -jar \$MUTECTPATH/muTect-1.1.1.jar
@@ -46,7 +46,8 @@
 	<data format="txt" name="coverage" label="Filename for coverage output" from_work_dir="coverage.wig.txt"/>
   	</data>
   </outputs>
-  	
+
+
   <help> 
 
 .. class:: infomark
diff -r a4e511091a2f -r 50a1971f6a7d tool_dependencies.xml
--- a/tool_dependencies.xml	Wed Jul 17 12:42:48 2013 -0500
+++ b/tool_dependencies.xml	Wed Jul 17 13:07:51 2013 -0500
@@ -1,6 +1,6 @@
 <?xml version="1.0"?>
 <tool_dependency>
     <set_environment version="1.0">
-        <environment_variable name="MUTECTPATH" action="set_to">$REPOSITORY_INSTALL_DIR</environment_variable>
+        <environment_variable name="MUTECTPATH" action="set_to">$REPOSITORY_INSTALL_DIR</environment_variable>   
     </set_environment>
 </tool_dependency>