# HG changeset patch
# User nilesh
# Date 1374085305 18000
# Node ID 7590067ab75d8e568893bf72e0a56ea983c4beaf
# Parent  50a1971f6a7dff6d3c60ed222ab1b95aa1615452
made changes

diff -r 50a1971f6a7d -r 7590067ab75d muTect.xml
--- a/muTect.xml	Wed Jul 17 13:07:51 2013 -0500
+++ b/muTect.xml	Wed Jul 17 13:21:45 2013 -0500
@@ -29,8 +29,8 @@
   	<param name="dbsnp" type="data" format="vcf" label="dbsnp.vcf file" />
   	<param name="intervals" type="text" label="Intervals to process" help="In format 'chr1:1500-2500; chr2:2500-3500', separated by semicolons" optional="true"/>
   	<param name="intervalfile" type="data" format="txt" label="Intervals to process (.txt file)" help="'chr1:1500-2500', one entry per line" optional="true"/>
-  	<param name="normal" type="bam" label="Normal BAM file"/>
-  	<param name="tumor" type="bam" label="Tumor BAM file"/>	
+  	<param name="normal" type="data" format="bam" label="Normal BAM file"/>
+  	<param name="tumor" type="data" format="bam" label="Tumor BAM file"/>	
     <conditional name="cosmic">
 		<param name="has_cosmic" type="boolean" label="Cosmic vcf file available for specimen" value="false" />
 		<when value="true">
@@ -44,7 +44,6 @@
   <outputs>
 	<data format="txt" name="callstats" label="Detailed caller output" from_work_dir="call_stats.txt"/>
 	<data format="txt" name="coverage" label="Filename for coverage output" from_work_dir="coverage.wig.txt"/>
-  	</data>
   </outputs>