Mercurial > repos > nikos > ucsc_tools
diff tool_dependencies.xml @ 20:3dede45026d7 draft
Uploaded
| author | nikos |
|---|---|
| date | Tue, 09 Sep 2014 10:32:57 -0400 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool_dependencies.xml Tue Sep 09 10:32:57 2014 -0400 @@ -0,0 +1,88 @@ +<?xml version="1.0"?> +<tool_dependency> + <package name="bigWigSummary" version="1.0"> + <install version="1.0"> + <actions> + <action type="download_by_url">http://hgdownload.soe.ucsc.edu/admin/exe/linux.x86_64/bigWigSummary</action> + <action type="move_directory_files"> + <source_directory>.</source_directory> + <destination_directory>$INSTALL_DIR</destination_directory> + </action> + <action type="chmod"><file mode="755">$INSTALL_DIR/bigWigSummary</file></action> + <action type="set_environment"> + <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable> + </action> + </actions> + </install> + <readme> + </readme> + </package> + <package name="bedClip" version="1.0"> + <install version="1.0"> + <actions> + <action type="download_by_url">http://hgdownload.soe.ucsc.edu/admin/exe/linux.x86_64/bedClip</action> + <action type="move_directory_files"> + <source_directory>.</source_directory> + <destination_directory>$INSTALL_DIR</destination_directory> + </action> + <action type="chmod"><file mode="755">$INSTALL_DIR/bedClip</file></action> + <action type="set_environment"> + <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable> + </action> + </actions> + </install> + <readme> + </readme> + </package> + <package name="bedExtendRanges" version="1.0"> + <install version="1.0"> + <actions> + <action type="download_by_url">http://hgdownload.soe.ucsc.edu/admin/exe/linux.x86_64/bedExtendRanges</action> + <action type="move_directory_files"> + <source_directory>.</source_directory> + <destination_directory>$INSTALL_DIR</destination_directory> + </action> + <action type="chmod"><file mode="755">$INSTALL_DIR/bedExtendRanges</file></action> + <action type="set_environment"> + <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable> + </action> + </actions> + </install> + <readme> + </readme> + </package> + <package name="faCount" version="1.0"> + <install version="1.0"> + <actions> + <action type="download_by_url">http://hgdownload.soe.ucsc.edu/admin/exe/linux.x86_64/faCount</action> + <action type="move_directory_files"> + <source_directory>.</source_directory> + <destination_directory>$INSTALL_DIR</destination_directory> + </action> + <action type="chmod"><file mode="755">$INSTALL_DIR/faCount</file></action> + <action type="set_environment"> + <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable> + </action> + </actions> + </install> + <readme> + </readme> + </package> + <package name="fetchChromSizes" version="1.0"> + <install version="1.0"> + <actions> + <action type="download_by_url">http://hgdownload.soe.ucsc.edu/admin/exe/linux.x86_64/fetchChromSizes</action> + <action type="move_directory_files"> + <source_directory>.</source_directory> + <destination_directory>$INSTALL_DIR</destination_directory> + </action> + <action type="chmod"><file mode="755">$INSTALL_DIR/fetchChromSizes</file></action> + <action type="set_environment"> + <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable> + </action> + </actions> + </install> + <readme> + </readme> + </package> +</tool_dependency>