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annotate mafft/test/sample.dpparttree @ 18:e4d75f9efb90 draft

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planemo upload commit b'4303231da9e48b2719b4429a29b72421d24310f4\n'-dirty
author nick
date Thu, 02 Feb 2017 18:44:31 -0500
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18
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1 > 1== M63632 1 Lampetra japonica rhodopsin <>[BBRC174,1125-1132'91]
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2 MNG---------------------------------------------------------
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3 -TE--GDNFYVPF-----------------SNKTGLARSPYEYPQ---------Y-YLAE
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4 PWK---------YSALAAYMFFLILVGFPVNFLTLFVTVQHKKLRTPLNYILLNLAMANL
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5 FMVLFGF-TVTMYTS-MN-GYFV--FGPTMCSIEGFFATLGGEVALWSLVVLAIERYIVI
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6 CKPMGNF-RFGNTHAIMGVAFTWIMALAC-AAPPLVG-W-----SRYIPEGMQCSCGPDY
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7 YTLNPNFNNESYVVYMFVVHFLVPFVIIFFCYGRLLCTV----KE---------------
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8 ------------------------------------------------------------
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9 -----------------------------------------------------------A
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10 AAAQQ---------------------------------ESASTQKAEKEVTRMVVLMVIG
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11 FLVCWVPYASVAFYIFT-HQGS--DFGATFMTLPAFFAKSSALYNPVIYILMNKQFRNCM
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12 ITTLCC-------GKNPLGD-DE---SGASTSKT------------------------EV
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13 SSVS--------------------------------------------------------
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14 ------TSPVSP-A---
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15 > 2== U22180 1 rat opsin <rod>[J.Mol.Neurosci.5(3),207-209'94]
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16 MNG---------------------------------------------------------
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17 -TE--GPNFYVPF-----------------SNITGVVRSPFEQPQ---------Y-YLAE
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18 PWQ---------FSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADL
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19 FMVFGGF-TTTLYTS-LH-GYFV--FGPTGCNLEGFFATLGGEIGLWSLVVLAIERYVVV
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20 CKPMSNF-RFGENHAIMGVAFTWVMALAC-AAPPLVG-W-----SRYIPEGMQCSCGIDY
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21 YTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTV----KE---------------
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22 ------------------------------------------------------------
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23 -----------------------------------------------------------A
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24 AAQQQ---------------------------------ESATTQKAEKEVTRMVIIMVIF
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25 FLICWLPYASVAMYIFT-HQGS--NFGPIFMTLPAFFAKTASIYNPIIYIMMNKQFRNCM
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26 LTSLCC-------GKNPLGD-DE---ASATASKT------------------------E-
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27 ------------------------------------------------------------
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28 ------TSQVAP-A---
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29 > 3== M92038 1 chicken green sensitive cone opsin <retina>[PNAS89,5932-5936'9
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30 MNG---------------------------------------------------------
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31 -TE--GINFYVPM-----------------SNKTGVVRSPFEYPQ---------Y-YLAE
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32 PWK---------YRLVCCYIFFLISTGLPINLLTLLVTFKHKKLRQPLNYILVNLAVADL
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33 FMACFGF-TVTFYTA-WN-GYFV--FGPVGCAVEGFFATLGGQVALWSLVVLAIERYIVV
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34 CKPMGNF-RFSATHAMMGIAFTWVMAFSC-AAPPLFG-W-----SRYMPEGMQCSCGPDY
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35 YTHNPDYHNESYVLYMFVIHFIIPVVVIFFSYGRLICKV----RE---------------
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36 ------------------------------------------------------------
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37 -----------------------------------------------------------A
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38 AAQQQ---------------------------------ESATTQKAEKEVTRMVILMVLG
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39 FMLAWTPYAVVAFWIFT-NKGA--DFTATLMAVPAFFSKSSSLYNPIIYVLMNKQFRNCM
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40 ITTICC-------GKNPFGD-EDV-SSTVSQSKT------------------------EV
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41 SSVS--------------------------------------------------------
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42 ------SSQVSP-A---
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43 > 4=p A45229 opsin, green-sensitive (clone GFgr-1) - goldfish
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44 MNG---------------------------------------------------------
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45 -TE--GKNFYVPM-----------------SNRTGLVRSPFEYPQ---------Y-YLAE
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46 PWQ---------FKILALYLFFLMSMGLPINGLTLVVTAQHKKLRQPLNFILVNLAVAGT
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47 IMVCFGF-TVTFYTA-IN-GYFV--LGPTGCAVEGFMATLGGEVALWSLVVLAIERYIVV
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48 CKPMGSF-KFSSSHAFAGIAFTWVMALAC-AAPPLFG-W-----SRYIPEGMQCSCGPDY
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49 YTLNPDYNNESYVIYMFVCHFILPVAVIFFTYGRLVCTV----KA---------------
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50 ------------------------------------------------------------
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51 -----------------------------------------------------------A
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52 AAQQQ---------------------------------DSASTQKAEREVTKMVILMVFG
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53 FLIAWTPYATVAAWIFF-NKGA--DFSAKFMAIPAFFSKSSALYNPVIYVLLNKQFRNCM
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54 LTTIFC-------GKNPLGD-DE--SSTVSTSKT------------------------EV
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55 SS----------------------------------------------------------
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56 ---------VSP-A---
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57 > 5=p B45229 opsin, green-sensitive (clone GFgr-2) - goldfish
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58 MNG---------------------------------------------------------
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59 -TE--GNNFYVPL-----------------SNRTGLVRSPFEYPQ---------Y-YLAE
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60 PWQ---------FKLLAVYMFFLICLGLPINGLTLICTAQHKKLRQPLNFILVNLAVAGA
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61 IMVCFGF-TVTFYTA-IN-GYFA--LGPTGCAVEGFMATLGGEVALWSLVVLAIERYIVV
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62 CKPMGSF-KFSSTHASAGIAFTWVMAMAC-AAPPLVG-W-----SRYIPEGIQCSCGPDY
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63 YTLNPEYNNESYVLYMFICHFILPVTIIFFTYGRLVCTV----KA---------------
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64 ------------------------------------------------------------
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65 -----------------------------------------------------------A
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66 AAQQQ---------------------------------DSASTQKAEREVTKMVILMVLG
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67 FLVAWTPYATVAAWIFF-NKGA--AFSAQFMAIPAFFSKTSALYNPVIYVLLNKQFRSCM
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68 LTTLFC-------GKNPLGD-EE--SSTVSTSKT------------------------EV
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69 SS----------------------------------------------------------
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70 ---------VSP-A---
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71 > 6== L11864 1 Carassius auratus blue cone opsin <retina>[Biochemistry32,208-
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72 MKQ---------------------------------------------------------
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73 -VPEFHEDFYIPIP-------------LDINNLS--AYSPFLVPQ---------D-HLGN
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74 QGI---------FMAMSVFMFFIFIGGASINILTILCTIQFKKLRSHLNYILVNLSIANL
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75 FVAIFGS-PLSFYSF-FN-RYFI--FGATACKIEGFLATLGGMVGLWSLAVVAFERWLVI
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76 CKPLGNF-TFKTPHAIAGCILPWISALAA-SLPPLFG-W-----SRYIPEGLQCSCGPDW
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77 YTTNNKYNNESYVMFLFCFCFAVPFGTIVFCYGQLLITL----KL---------------
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78 ------------------------------------------------------------
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79 -----------------------------------------------------------A
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80 AKAQA---------------------------------DSASTQKAEREVTKMVVVMVLG
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81 FLVCWAPYASFSLWIVS-HRGE--EFDLRMATIPSCLSKASTVYNPVIYVLMNKQFRSCM
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82 M-KMVC-------GKN-IEE-DE---ASTSSQVT------------------------QV
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83 SS----------------------------------------------------------
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84 ---------VAPEK---
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85 > 7== M13299 1 human BCP <>[Science232(4747),193-202'86]
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86 MRK---------------------------------------------------------
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87 -MS--EEEFYL------------------FKNISSV--GPWDGPQ---------Y-HIAP
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88 VWA---------FYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVNVSFGGF
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89 LLCIFSV-FPVFVAS-CN-GYFV--FGRHVCALEGFLGTVAGLVTGWSLAFLAFERYIVI
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90 CKPFGNF-RFSSKHALTVVLATWTIGIGV-SIPPFFG-W-----SRFIPEGLQCSCGPDW
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91 YTVGTKYRSESYTWFLFIFCFIVPLSLICFSYTQLLRAL----KA---------------
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92 ------------------------------------------------------------
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93 -----------------------------------------------------------V
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94 AAQQQ---------------------------------ESATTQKAEREVSRMVVVMVGS
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95 FCVCYVPYAAFAMYMVN-NRNH--GLDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQACI
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96 M-KMVC-------GKA-MTD-ES---DTCSSQKT------------------------EV
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97 STVS--------------------------------------------------------
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98 ------STQVGP-N---
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99 > 8=opsin, greensensitive human (fragment) S07060
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100 ------------------------------------------------------------
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101 ------------------------------------------------------------
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102 ----------------------------------------------------------DL
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103 AETVIAS-TISIVNQ-VS-GYFV--LGHPMCVLEGYTVSLCGITGLWSLAIISWERWLVV
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104 CKPFGNV-RFDAKLAIVGIAFSWIWAAVW-TAPPIFG-W-----SRYWPHGLKTSCGPDV
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105 FSGSSYPGVQSYMIVLMVTCCITPLSIIVLCYLQVWLAI----RA---------------
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106 ------------------------------------------------------------
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107 -----------------------------------------------------------V
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108 AKQQK---------------------------------ESESTQKAEKEVTRMVVVMVLA
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109 FC----------------------------------------------------------
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110 ------------------------------------------------------------
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111 ------------------------------------------------------------
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112 -----------------
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113 > 9== K03494 1 human GCP <>[Science232(4747),193-202'86]
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114 MAQQWSLQRLA---------------------------------------GRHPQDSYED
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115 STQ--SSIFTYTN-----------------SNST---RGPFEGPN---------Y-HIAP
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116 RWV---------YHLTSVWMIFVVIASVFTNGLVLAATMKFKKLRHPLNWILVNLAVADL
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117 AETVIAS-TISVVNQ-VY-GYFV--LGHPMCVLEGYTVSLCGITGLWSLAIISWERWMVV
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118 CKPFGNV-RFDAKLAIVGIAFSWIWAAVW-TAPPIFG-W-----SRYWPHGLKTSCGPDV
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119 FSGSSYPGVQSYMIVLMVTCCITPLSIIVLCYLQVWLAI----RA---------------
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120 ------------------------------------------------------------
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121 -----------------------------------------------------------V
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122 AKQQK---------------------------------ESESTQKAEKEVTRMVVVMVLA
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123 FCFCWGPYAFFACFAAA-NPGY--PFHPLMAALPAFFAKSATIYNPVIYVFMNRQFRNCI
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124 LQLF---------GKK-VDD-GS---ELSSASKT------------------------EV
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125 SSV---------------------------------------------------------
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126 -------SSVSP-A---
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127 > 10== Z68193 1 human Red Opsin <>[]
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128 MAQQWSLQRLA---------------------------------------GRHPQDSYED
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129 STQ--SSIFTYTN-----------------SNST---RGPFEGPN---------Y-HIAP
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130 RWV---------YHLTSVWMIFVVTASVFTNGLVLAATMKFKKLRHPLNWILVNLAVADL
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131 AETVIAS-TISIVNQ-VS-GYFV--LGHPMCVLEGYTVSLCGITGLWSLAIISWERWLVV
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132 CKPFGNV-RFDAKLAIVGIAFSWIWSAVW-TAPPIFG-W-----SRYWPHGLKTSCGPDV
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133 FSGSSYPGVQSYMIVLMVTCCIIPLAIIMLCYLQVWLAI----RA---------------
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134 ------------------------------------------------------------
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135 -----------------------------------------------------------V
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136 AKQQK---------------------------------ESESTQKAEKEVTRMVVVMIFA
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137 YCVCWGPYTFFACFAAA-NPGY--AFHPLMAALPAYFAKSATIYNPVIYVFMNRQFRNCI
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138 LQLF---------GKK-VDD-GS---ELSSASKT------------------------EV
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139 SSV---------------------------------------------------------
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140 -------SSVSP-A---
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141 > 11== M92036 1 Gecko gecko P521 <retina>[PNAS89,6841-6845'92]
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142 MTEAWNVAVFA---------------------------------------ARRSRDD-DD
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143 TTR--GSVFTYTN-----------------TNNT---RGPFEGPN---------Y-HIAP
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144 RWV---------YNLVSFFMIIVVIASCFTNGLVLVATAKFKKLRHPLNWILVNLAFVDL
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145 VETLVAS-TISVFNQ-IF-GYFI--LGHPLCVIEGYVVSSCGITGLWSLAIISWERWFVV
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146 CKPFGNI-KFDSKLAIIGIVFSWVWAWGW-SAPPIFG-W-----SRYWPHGLKTSCGPDV
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147 FSGSVELGCQSFMLTLMITCCFLPLFIIIVCYLQVWMAI----RA---------------
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148 ------------------------------------------------------------
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149 -----------------------------------------------------------V
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150 AAQQK---------------------------------ESESTQKAEREVSRMVVVMIVA
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151 FCICWGPYASFVSFAAA-NPGY--AFHPLAAALPAYFAKSATIYNPVIYVFMNRQFRNCI
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152 MQLF---------GKK-VDD-GS---EASTTSRT------------------------EV
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153 SSVS--------------------------------------------------------
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154 ------NSSVAP-A---
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155 > 12== M62903 1 chicken visual pigment <>[BBRC173,1212-1217'90]
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156 MAA-WEAAFAA---------------------------------------RRRHEE--ED
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157 TTR--DSVFTYTN-----------------SNNT---RGPFEGPN---------Y-HIAP
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158 RWV---------YNLTSVWMIFVVAASVFTNGLVLVATWKFKKLRHPLNWILVNLAVADL
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159 GETVIAS-TISVINQ-IS-GYFI--LGHPMCVVEGYTVSACGITALWSLAIISWERWFVV
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160 CKPFGNI-KFDGKLAVAGILFSWLWSCAW-TAPPIFG-W-----SRYWPHGLKTSCGPDV
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161 FSGSSDPGVQSYMVVLMVTCCFFPLAIIILCYLQVWLAI----RA---------------
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162 ------------------------------------------------------------
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163 -----------------------------------------------------------V
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164 AAQQK---------------------------------ESESTQKAEKEVSRMVVVMIVA
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165 YCFCWGPYTFFACFAAA-NPGY--AFHPLAAALPAYFAKSATIYNPIIYVFMNRQFRNCI
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166 LQLF---------GKK-VDD-GS---EVST-SRT------------------------EV
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167 SSVS--------------------------------------------------------
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168 ------NSSVSP-A---
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169 > 13== S75720 1 chicken P-opsin <>[Science267(5203),1502-1506'95]
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170 MS--------------------------------------------------------SN
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171 SSQ--AP-----------------------PNGT---PGPFDGPQ---------WPYQAP
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172 QST---------YVGVAVLMGTVVACASVVNGLVIVVSICYKKLRSPLNYILVNLAVADL
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173 LVTLCGS-SVSLSNN-IN-GFFV--FGRRMCELEGFMVSLTGIVGLWSLAILALERYVVV
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174 CKPLGDF-QFQRRHAVSGCAFTWGWALLW-SAPPLLG-W-----SSYVPEGLRTSCGPNW
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175 YTGGSNN--NSYILSLFVTCFVLPLSLILFSYTNLLLTL----RA---------------
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176 ------------------------------------------------------------
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177 -----------------------------------------------------------A
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178 AAQQK---------------------------------EADTTQRAEREVTRMVIVMVMA
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179 FLLCWLPYSTFALVVAT-HKGI--IIQPVLASLPSYFSKTATVYNPIIYVFMNKQFQSCL
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180 LEMLCC----GYQPQR-TGK-AS---PGTPGPHA------------------------DV
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181 TAAG--------------------------------------------------------
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182 -----LRNKVMP-AHPV
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183 > 14== M17718 1 D.melanogaster Rh3 <>[J.Neurosci.7,1550-1557'87]
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184 MESGNV-----------------------------------------------SSSLFGN
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185 VSTALRPEARLSA---------ETRLLGW--------NVPPEELR-----------HIPE
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186 HWLTYPEPPESMNYLLGTLYIFFTLMSMLGNGLVIWVFSAAKSLRTPSNILVINLAFCDF
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187 -MMMVKT-PIFIYNS-FH-QGYA--LGHLGCQIFGIIGSYTGIAAGATNAFIAYDRFNVI
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188 TRPMEGK--MTHGKAIAMIIFIYMYATPW-VVACYTETW-----GRFVPEGYLTSCTFDY
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189 LT--DNFDTRLFVACIFFFSFVCPTTMITYYYSQIVGHVFSHEKA---------------
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190 ------------------------------------------------------------
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191 -----------------------------------------------------------L
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192 RDQAKK--------------------MNVESL---RSNVDKNKETAEIRIAKAAITICFL
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193 FFCSWTPYGVMSLIGAF-GDKT--LLTPGATMIPACACKMVACIDPFVYAISHPRYRMEL
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194 QKRCPW----LALNEKAPES--SAVASTSTTQEP------------------------QQ
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195 T-----------------------------------------------------------
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196 ----------TA-A---
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197 > 15== X65879 1 Drosophila pseudoobscura Dpse\Rh3 <>[Genetics132(1),193-204'92
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198 MEYHNV-----------------------------------------------SSVL-GN
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199 VSSVLRPDARLSA---------ESRLLGW--------NVPPDELR-----------HIPE
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200 HWLIYPEPPESMNYLLGTLYIFFTVISMIGNGLVMWVFSAAKSLRTPSNILVINLAFCDF
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201 -MMMIKT-PIFIYNS-FH-QGYA--LGHLGCQIFGVIGSYTGIAAGATNAFIAYDRYNVI
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202 TRPMEGK--MTHGKAIAMIIFIYLYATPW-VVACYTESW-----GRFVPEGYLTSCTFDY
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203 LT--DNFDTRLFVACIFFFSFVCPTTMITYYYSQIVGHVFSHEKA---------------
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204 ------------------------------------------------------------
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205 -----------------------------------------------------------L
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206 RDQAKK--------------------MNVDSL---RSNVDKSKEAAEIRIAKAAITICFL
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207 FFASWTPYGVMSLIGAF-GDKT--LLTPGATMIPACTCKMVACIDPFVYAISHPRYRMEL
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208 QKRCPW----LAISEKAPES--RAAISTSTTQEQ------------------------QQ
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209 T-----------------------------------------------------------
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210 ----------TA-A---
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211 > 16== M17730 1 D.melanogaster Rh4 opsin <>[J.Neurosci.7,1558-1566'87]
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212 ME-----------------------------------------------------PLCNA
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213 SEPPLRPEAR-SSG------NGDLQFLGW--------NVPPDQIQ-----------YIPE
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214 HWLTQLEPPASMHYMLGVFYIFLFCASTVGNGMVIWIFSTSKSLRTPSNMFVLNLAVFDL
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215 -IMCLKA-PIF--NS-FH-RGFAIYLGNTWCQIFASIGSYSGIGAGMTNAAIGYDRYNVI
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216 TKPMNRN--MTFTKAVIMNIIIWLYCTPW-VVLPLTQFW-----DRFVPEGYLTSCSFDY
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217 LS--DNFDTRLFVGTIFFFSFVCPTLMILYYYSQIVGHVFSHEKA---------------
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218 ------------------------------------------------------------
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219 -----------------------------------------------------------L
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220 REQAKK--------------------MNVESL---RSNVDKSKETAEIRIAKAAITICFL
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221 FFVSWTPYGVMSLIGAF-GDKS--LLTQGATMIPACTCKLVACIDPFVYAISHPRYRLEL
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222 QKRCPW----LGVNEKSGEI--SSAQST-TTQEQ------------------------QQ
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223 T-----------------------------------------------------------
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224 ----------TA-A---
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225 > 17== X65880 1 Drosophila pseudoobscura Dpse\Rh4 <>[Genetics132(1),193-204'92
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226 MD-----------------------------------------------------ALCNA
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227 SEPPLRPEARMSSG------SDELQFLGW--------NVPPDQIQ-----------YIPE
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228 HWLTQLEPPASMHYMLGVFYIFLFFASTLGNGMVIWIFSTSKSLRTPSNMFVLNLAVFDL
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229 -IMCLKA-PIFIYNS-FH-RGFA--LGNTWCQIFASIGSYSGIGAGMTNAAIGYDRYNVI
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230 TKPMNRN--MTFTKAVIMNIIIWLYCTPW-VVLPLTQFW-----DRFVPEGYLTSCSFDY
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231 LS--DNFDTRLFVGTIFLFSFVVPTLMILYYYSQIVGHVFNHEKA---------------
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232 ------------------------------------------------------------
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233 -----------------------------------------------------------L
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234 REQAKK--------------------MNVESL---RSNVDKSKETAEIRIAKAAITICFL
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235 FFVSWTPYGVMSLIGAF-GDKS--LLTPGATMIPACTCKLVACIEPFVYAISHPRYRMEL
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236 QKRCPW----LGVNEKSGEA--SSAQST-TTQEQ-----------------------TQQ
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237 T-----------------------------------------------------------
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238 ----------SA-A---
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239 > 18== D50584 1 Hemigrapsus sanguineus opsin BcRh2 <compound eye>[J.Exp.Biol.1
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240 MT----------------------------------------------------------
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241 --NATGPQMAYYGA------ASMD-F-GYPEGVSIVDFVRPEIKP-----------YVHQ
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242 HWYNYPPVNPMWHYLLGVIYLFLGTVSIFGNGLVIYLFNKSAALRTPANILVVNLALSDL
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243 IMLTTNV-PFFTYNC-FSGGVWM--FSPQYCEIYACLGAITGVCSIWLLCMISFDRYNII
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244 CNGFNGP-KLTTGKAVVFALISWVIAIGC-ALPPFFG-W-----GNYILEGILDSCSYDY
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245 LT--QDFNTFSYNIFIFVFDYFLPAAIIVFSYVFIVKAIFAHEAA---------------
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246 ------------------------------------------------------------
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247 -----------------------------------------------------------M
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248 RAQAKK--------------------MNVSTL---RS-NEADAQRAEIRIAKTALVNVSL
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249 WFICWTPYALISLKGVM-GDTS--GITPLVSTLPALLAKSCSCYNPFVYAISHPKYRLAI
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250 TQHLPW----FCVHETETKS-NDDSQSNSTVAQ---------------------------
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251 ------------------------------------------------------------
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252 ----------DK-A---
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253 > 19== D50583 1 Hemigrapsus sanguineus opsin BcRh1 <compound eye>[J.Exp.Biol.1
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254 MA----------------------------------------------------------
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255 --NVTGPQMAFYGS------GAAT-F-GYPEGMTVADFVPDRVKH-----------MVLD
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256 HWYNYPPVNPMWHYLLGVVYLFLGVISIAGNGLVIYLYMKSQALKTPANMLIVNLALSDL
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257 IMLTTNF-PPFCYNC-FSGGRWM--FSGTYCEIYAALGAITGVCSIWTLCMISFDRYNII
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258 CNGFNGP-KLTQGKATFMCGLAWVISVGW-SLPPFFG-W-----GSYTLEGILDSCSYDY
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259 FT--RDMNTITYNICIFIFDFFLPASVIVFSYVFIVKAIFAHEAA---------------
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260 ------------------------------------------------------------
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261 -----------------------------------------------------------M
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262 RAQAKK--------------------MNVTNL---RS-NEAETQRAEIRIAKTALVNVSL
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263 WFICWTPYAAITIQGLL-GNAE--GITPLLTTLPALLAKSCSCYNPFVYAISHPKFRLAI
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264 TQHLPW----FCVHEKDPND-VEENQSSNTQTQ---------------------------
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265 ------------------------------------------------------------
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266 ----------EK-S---
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267 > 20== K02320 1 D.melanogaster opsin <>[Cell40,851-858'85]
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268 ME------------------------------------------------------SFAV
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269 AAAQLGPHFAPLS------------------NGSVVDKVTPDMAH-----------LISP
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270 YWNQFPAMDPIWAKILTAYMIMIGMISWCGNGVVIYIFATTKSLRTPANLLVINLAISDF
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271 GIMITNT-PMMGINL-YF-ETWV--LGPMMCDIYAGLGSAFGCSSIWSMCMISLDRYQVI
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272 VKGMAGR-PMTIPLALGKM---------------------------YVPEGNLTSCGIDY
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273 LE--RDWNPRSYLIFYSIFVYYIPLFLICYSYWFIIAAVSAHEKA---------------
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274 ------------------------------------------------------------
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275 -----------------------------------------------------------M
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276 REQAKK--------------------MNVKSL---RS-SEDAEKSAEGKLAKVALVTITL
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277 WFMAWTPYLVINCMGLF-KF-E--GLTPLNTIWGACFAKSAACYNPIVYGISHPKYRLAL
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278 KEKCPC----CVFGKVDDGK-SSDAQSQATASEA------------------------E-
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279 ------------------------------------------------------------
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280 ----------SK-A---
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281 > 21== K02315 1 D.melanogaster ninaE <>[Cell40,839-850'85]
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282 ME------------------------------------------------------SFAV
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283 AAAQLGPHFAPLS------------------NGSVVDKVTPDMAH-----------LISP
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284 YWNQFPAMDPIWAKILTAYMIMIGMISWCGNGVVIYIFATTKSLRTPANLLVINLAISDF
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285 GIMITNT-PMMGINL-YF-ETWV--LGPMMCDIYAGLGSAFGCSSIWSMCMISLDRYQVI
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286 VKGMAGR-PMTIPLALGKIAYIWFMSSIW-CLAPAFG-W-----SRYVPEGNLTSCGIDY
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287 LE--RDWNPRSYLIFYSIFVYYIPLFLICYSYWFIIAAVSAHEKA---------------
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288 ------------------------------------------------------------
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289 -----------------------------------------------------------M
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290 REQAKK--------------------MNVKSL---RS-SEDAEKSAEGKLAKVALVTITL
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291 WFMAWTPYLVINCMGLF-KF-E--GLTPLNTIWGACFAKSAACYNPIVYGISHPKYRLAL
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292 KEKCPC----CVFGKVDDGK-SSDAQSQATASEA------------------------E-
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293 ------------------------------------------------------------
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294 ----------SK-A---
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295 > 22== X65877 1 Drosophila pseudoobscura Dpse\ninaE <>[Genetics132(1),193-204'
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296 MD------------------------------------------------------SFAA
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297 VATQLGPQFAAPS------------------NGSVVDKVTPDMAH-----------LISP
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298 YWDQFPAMDPIWAKILTAYMIIIGMISWCGNGVVIYIFATTKSLRTPANLLVINLAISDF
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299 GIMITNT-PMMGINL-YF-ETWV--LGPMMCDIYAGLGSAFGCSSIWSMCMISLDRYQVI
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300 VKGMAGR-PMTIPLALGKIAYIWFMSTIWCCLAPVFG-W-----SRYVPEGNLTSCGIDY
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301 LE--RDWNPRSYLIFYSIFVYYIPLFLICYSYWFIIAAVSAHEKA---------------
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302 ------------------------------------------------------------
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303 -----------------------------------------------------------M
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304 REQAKK--------------------MNVKSL---RS-SEDADKSAEGKLAKVALVTISL
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305 WFMAWTPYLVINCMGLF-KF-E--GLTPLNTIWGACFAKSAACYNPIVYGISHPKYRLAL
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306 KEKCPC----CVFGKVDDGK-SSEAQSQATTSEA------------------------E-
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307 ------------------------------------------------------------
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308 ----------SK-A---
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309 > 23== M12896 1 D.melanogaster Rh2 <>[Cell44,705-710'86]
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310 MERSHL-------------------------------------------------PETPF
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311 DLAHSGPRFQAQSS------G----------NGSVLDNVLPDMAH-----------LVNP
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312 YWSRFAPMDPMMSKILGLFTLAIMIISCCGNGVVVYIFGGTKSLRTPANLLVLNLAFSDF
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313 CMMASQS-PVMIINF-YY-ETWV--LGPLWCDIYAGCGSLFGCVSIWSMCMIAFDRYNVI
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314 VKGINGT-PMTIKTSIMKILFIWMMAVFW-TVMPLIG-W-----SAYVPEGNLTACSIDY
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315 MT--RMWNPRSYLITYSLFVYYTPLFLICYSYWFIIAAVAAHEKA---------------
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316 ------------------------------------------------------------
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317 -----------------------------------------------------------M
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318 REQAKK--------------------MNVKSL---RS-SEDCDKSAEGKLAKVALTTISL
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319 WFMAWTPYLVICYFGLF-KI-D--GLTPLTTIWGATFAKTSAVYNPIVYGISHPKYRIVL
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320 KEKCPM----CVFGNTDEPKPDAPASDTETTSEA------------------------D-
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321 ------------------------------------------------------------
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322 ----------SK-A---
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323 > 24== X65878 1 Drosophila pseudoobscura Dpse\Rh2 <>[Genetics132(1),193-204'92
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324 MERSLL-------------------------------------------------PEPPL
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325 AMALLGPRFEAQTG------G----------NRSVLDNVLPDMAP-----------LVNP
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326 HWSRFAPMDPTMSKILGLFTLVILIISCCGNGVVVYIFGGTKSLRTPANLLVLNLAFSDF
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327 CMMASQS-PVMIINF-YY-ETWV--LGPLWCDIYAACGSLFGCVSIWSMCMIAFDRYNVI
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328 VKGINGT-PMTIKTSIMKIAFIWMMAVFW-TIMPLIG-W-----SSYVPEGNLTACSIDY
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329 MT--RQWNPRSYLITYSLFVYYTPLFMICYSYWFIIATVAAHEKA---------------
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330 ------------------------------------------------------------
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331 -----------------------------------------------------------M
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332 RDQAKK--------------------MNVKSL---RS-SEDCDKSAENKLAKVALTTISL
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333 WFMAWTPYLIICYFGLF-KI-D--GLTPLTTIWGATFAKTSAVYNPIVYGISHPNDRLVL
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334 KEKCPM----CVCGTTDEPKPDAPPSDTETTSEA------------------------E-
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335 ------------------------------------------------------------
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336 ----------SK-D---
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337 > 25== U26026 1 Apis mellifera long-wavelength rhodopsin <>[]
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338 MI----------------------------------------------------------
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339 --AVSGPSYEAFSY------GGQARF----NNQTVVDKVPPDMLH-----------LIDA
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340 NWYQYPPLNPMWHGILGFVIGMLGFVSAMGNGMVVYIFLSTKSLRTPSNLFVINLAISNF
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341 LMMFCMS-PPMVINC-YY-ETWV--LGPLFCQIYAMLGSLFGCGSIWTMTMIAFDRYNVI
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342 VKGLSGK-PLSINGALIRIIAIWLFSLGW-TIAPMFG-W-----NRYVPEGNMTACGTDY
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343 FN--RGLLSASYLVCYGIWVYFVPLFLIIYSYWFIIQAVAAHEKN---------------
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344 ------------------------------------------------------------
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345 -----------------------------------------------------------M
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346 REQAKK--------------------MNVASL---RS-SENQNTSAECKLAKVALMTISL
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347 WFMAWTPYLVINFSGIF-NL-V--KISPLFTIWGSLFAKANAVYNPIVYGISHPKYRAAL
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348 FAKFPS----LAC-AAEPSS-DAVSTTSGTTTVT------------------------DN
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349 EK----------------------------------------------------------
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350 ----------SN-A---
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351 > 26== L03781 1 Limulus polyphemus opsin <>[PNAS90,6150-6154'93]
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352 M-----------------------------------------------------------
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353 ---ANQLSYSSLGW------PYQP-------NASVVDTMPKEMLY-----------MIHE
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354 HWYAFPPMNPLWYSILGVAMIILGIICVLGNGMVIYLMMTTKSLRTPTNLLVVNLAFSDF
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355 CMMAFMM-PTMTSNC-FA-ETWI--LGPFMCEVYGMAGSLFGCASIWSMVMITLDRYNVI
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356 VRGMAAA-PLTHKKATLLLLFVWIWSGGW-TILPFFG-W-----SRYVPEGNLTSCTVDY
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357 LT--KDWSSASYVVIYGLAVYFLPLITMIYCYFFIVHAVAEHEKQ---------------
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358 ------------------------------------------------------------
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359 -----------------------------------------------------------L
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360 REQAKK--------------------MNVASL---RANADQQKQSAECRLAKVAMMTVGL
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361 WFMAWTPYLIISWAGVF-SSGT--RLTPLATIWGSVFAKANSCYNPIVYGISHPRYKAAL
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362 YQRFPS----LACGSGESGS-DVKSEASATTTME------------------------EK
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363 PK----------------------------------------------------------
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364 ---------IPE-A---
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365 > 27== X07797 1 Octopus dofleini rhodopsin <>[FEBS232(1),69-72'88]
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366 MVESTTL--------------------------------------------VNQ------
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367 ---------------------------TWWYNPTVD---------------------IHP
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368 HWAKFDPIPDAVYYSVGIFIGVVGIIGILGNGVVIYLFSKTKSLQTPANMFIINLAMSDL
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369 SFSAINGFPLKTISA-FM-KKWI--FGKVACQLYGLLGGIFGFMSINTMAMISIDRYNVI
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370 GRPMAASKKMSHRRAFLMIIFVWMWSIVW-SVGPVFN-W-----GAYVPEGILTSCSFDY
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371 LS--TDPSTRSFILCMYFCGFMLPIIIIAFCYFNIVMSVSNHEKE---------------
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372 ------------------------------------------------------------
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373 -----------------------------------------------------------M
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374 AAMAKR--------------------LNAKEL---RK--AQAGASAEMKLAKISMVIITQ
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375 FMLSWSPYAIIALLAQF-GPAE--WVTPYAAELPVLFAKASAIHNPIVYSVSHPKFREAI
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376 QTTFPWLLTCCQFDEKECED-ANDAEEEVVASER--GGESRDAAQMKEMMAMMQKMQAQQ
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377 AAYQPPPPPQGY--PPQGYPPQGAYPPPQGYPPQGYPPQGYPPQGYPPQGAPPQVEAPQG
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378 APPQGVDNQAYQ-A---
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379 > 28== X70498 1 Todarodes pacificus rhodopsin <retina>[FEBS317(1-2),5-11'93]
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380 MGRDLR---------------------------------------------DNE------
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381 ---------------------------TWWYNPSIV---------------------VHP
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382 HWREFDQVPDAVYYSLGIFIGICGIIGCGGNGIVIYLFTKTKSLQTPANMFIINLAFSDF
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383 TFSLVNGFPLMTISC-FL-KKWI--FGFAACKVYGFIGGIFGFMSIMTMAMISIDRYNVI
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384 GRPMAASKKMSHRRAFIMIIFVWLWSVLW-AIGPIFG-W-----GAYTLEGVLCNCSFDY
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385 IS--RDSTTRSNILCMFILGFFGPILIIFFCYFNIVMSVSNHEKE---------------
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386 ------------------------------------------------------------
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387 -----------------------------------------------------------M
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388 AAMAKR--------------------LNAKEL---RK--AQAGANAEMRLAKISIVIVSQ
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389 FLLSWSPYAVVALLAQF-GPLE--WVTPYAAQLPVMFAKASAIHNPMIYSVSHPKFREAI
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390 SQTFPWVLTCCQFDDKETED-DKDAETEIPAGESSDAAPSADAAQMKEMMAMMQKMQQQQ
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391 AAY----PPQGYAPPPQGYPPQGY--PPQGYPPQGYPPQGYPP---PPQGAPPQ-GAPPA
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392 APPQGVDNQAYQ-A---
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393 > 29== L21195 1 human serotonin 5-HT7 receptor protein <placenta and fetal bra
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394 MMDVNSSGRPDLY----GHLRSFLLP--EVGRGLPDLSPDGGADPVAGSWAPHLLS---E
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395 VTASPAPTW----------------------------DAPPDNAS--GCGEQINY-----
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396 --------GRVEKVVIGSILTLITLLTIAGNCLVVISVCFVKKLRQPSNYLIVSLALADL
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397 SVAVAVM-PFVSVTDLIG-GKWI--FGHFFCNVFIAMDVMCCTASIMTLCVISIDRYLGI
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398 TRPLTYPVRQNGKCMAKMILSVWLLSASI-TLPPLFG-W-----AQNVNDDK--VCLIS-
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399 -------QDFGYTIYSTAVAFYIPMSVMLFMYYQIYKAARKSAAKHKF------------
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400 -----PGF---------------------------------PRVEPDSVI----------
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401 ------------ALNGIVK----------------------LQKEVEECAN--------L
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402 SRLLKH-----------------------------ER-KNISIFKREQKAATTLGIIVGA
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403 FTVCWLPFFLLSTARPFICGTSCSCIPLWVERTFLWLGYANSLINPFIYAFFNRDLRTTY
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404 RSLLQC--QYRNINRK---------LSAAGMHEA---------------LKLAERP--ER
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405 PEFVLQ------------------------------------------------------
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406 -----NADYCRKKGHDS
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407 > 30== L15228 1 rat 5HT-7 serotonin receptor <>[JBC268,18200-18204'93]
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408 M--------------------------------------------------PHLLSGFLE
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409 VTASPAPTW----------------------------DAPPDNVS--GCGEQINY-----
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410 --------GRVEKVVIGSILTLITLLTIAGNCLVVISVSFVKKLRQPSNYLIVSLALADL
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411 SVAVAVM-PFVSVTDLIG-GKWI--FGHFFCNVFIAMDVMCCTASIMTLCVISIDRYLGI
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412 TRPLTYPVRQNGKCMAKMILSVWLLSASI-TLPPLFG-W-----AQNVNDDK--VCLIS-
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413 -------QDFGYTIYSTAVAFYIPMSVMLFMYYQIYKAARKSAAKHKF------------
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414 -----PGF---------------------------------PRVQPESVI----------
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415 ------------SLNGVVK----------------------LQKEVEECAN--------L
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416 SRLLKH-----------------------------ER-KNISIFKREQKAATTLGIIVGA
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417 FTVCWLPFFLLSTARPFICGTSCSCIPLWVERTCLWLGYANSLINPFIYAFFNRDLRPTS
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418 RSLLQC--QYRNINRK---------LSAAGMHEA---------------LKLAERP--ER
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419 SEFVLQ------------------------------------------------------
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420 -----NSDHCGKKGHDT
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421 > 31=p A47425 serotonin receptor 5HT-7 - rat
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422 M--------------------------------------------------PHLLSGFLE
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423 VTASPAPTW----------------------------DAPPDNVS--GCGEQINY-----
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424 --------GRVEKVVIGSILTLITLLTIAGNCLVVISVSFVKKLRQPSNYLIVSLALADL
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425 SVAVAVM-PFVSVTDLIG-GKWI--FGHFFCNVFIAMDVMCCTASIMTLCVISIDRYLGI
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426 TRPLTYPVRQNGKCMAKMILSVWLLSASI-TLPPLFG-W-----AQNVNDDK--VCLIS-
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427 -------QDFGYTIYSTAVAFYIPMSVMLFMYYQIYKAARKSAAKHKF------------
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428 -----PGF---------------------------------PRVQPESVI----------
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429 ------------SLNGVVK----------------------LQKEVEECAN--------L
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430 SRLLKH-----------------------------ER-KNISIFKREQKAATTLGIIVGA
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431 FTVCWLPFFLLSTARPFICGTSCSCIPLWVERTCLWLGYANSLINPFIYAFFNRDLRTTY
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432 RSLLQC--QYRNINRK---------LSAAGMHEA---------------LKLAERP--ER
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433 SEFVLQ------------------------------------------------------
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434 -----NSDHCGKKGHDT
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435 > 32== M83181 1 human serotonin receptor <>[JBC267(11),7553-7562'92]
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436 M-DVLSPGQ--------GNNTTSPPAPFETGGNTTGI-----------------------
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437 --SDVTVSY---------------------------------------------------
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438 ------------QVITSLLLGTLIFCAVLGNACVVAAIALERSLQNVANYLIGSLAVTDL
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439 MVSVLVL-PMAALYQ-VL-NKWT--LGQVTCDLFIALDVLCCTSSILHLCAIALDRYWAI
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440 TDPIDYVNKRTPRRAAALISLTWLIGFLI-SIPPMLG-WRTP--EDRSDPD---ACTIS-
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441 -------KDHGYTIYSTFGAFYIPLLLMLVLYGRIFRAARFRIRK---------------
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442 ------------------------TVKKVEKTGADTRHGASPAPQPKKSVNGESGSRNWR
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443 LGVESKAGGAL-CANGAVRQGDDGAALEVIEVHRVGNSKEHLPLPSEAGPTPCAP-----
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444 ASFERK-----------NERNA-------------EA-KRKMALARERKTVKTLGIIMGT
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445 FILCWLPFFIVALVLPF-CESSC-HMPTLLGAIINWLGYSNSLLNPVIYAYFNKDFQNAF
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446 KKIIKC--KFCR------------------------------------------------
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447 ------------------------------------------------------------
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448 ----------------Q
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449 > 33=p A35181 serotonin receptor class 1A - rat
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450 M-DVFSFGQ--------GNNTTASQEPFGTGGNVTSI-----------------------
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451 --SDVTFSY---------------------------------------------------
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452 ------------QVITSLLLGTLIFCAVLGNACVVAAIALERSLQNVANYLIGSLAVTDL
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453 MVSVLVL-PMAALYQ-VL-NKWT--LGQVTCDLFIALDVLCCTSSILHLCAIALDRYWAI
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454 TDPIDYVNKRTPRRAAALISLTWLIGFLI-SIPPMLG-WRTP--EDRSDPD---ACTIS-
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455 -------KDHGYTIYSTFGAFYIPLLLMLVLYGRIFRAARFRIRK---------------
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456 ------------------------TVRKVEKKGAGTSLGTSSAPPPKKSLNGQPGSGDWR
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457 RCAENRAVGTP-CTNGAVRQGDDEATLEVIEVHRVGNSKEHLPLPSESGSNSYAP-----
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458 ACLERK-----------NERNA-------------EA-KRKMALARERKTVKTLGIIMGT
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459 FILCWLPFFIVALVLPF-CESSC-HMPALLGAIINWLGYSNSLLNPVIYAYFNKDFQNAF
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460 KKIIKC--KFCR------------------------------------------------
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461 ------------------------------------------------------------
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462 ----------------R
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463 > 34== L06803 1 Lymnaea stagnalis serotonin receptor <>[PNAS90,11-15'93]
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464 M-ANFTFGDLALDVARMGGLASTPSGLRSTGLTTPGLSPTG------------------L
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465 VTSDFNDSYGLTGQFINGSHSSRSR-----DNASAN-DTSATNMTDDRYWSLTVY-----
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466 --------SHEHLVLTSVILGLFVLCCIIGNCFVIAAVMLERSLHNVANYLILSLAVADL
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467 MVAVLVM-PLSVVSE-IS-KVWF--LHSEVCDMWISVDVLCCTASILHLVAIAMDRYWAV
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468 TS-IDYIRRRSARRILLMIMVVWIVALFI-SIPPLFG-WRDP--NN--DPDKTGTCIIS-
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469 -------QDKGYTIFSTVGAFYLPMLVMMIIYIRIWLVARSRIRKDKFQMTKARLKTEET
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470 TLVASPKTEYSVVSDCNGCNSPDSTTEKKKRRAPFKSYGCSPRPERKK------------
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471 ----NRAKKLPENANGVNSNSSSSERLKQIQIE-----------TAEAFANGCAEEAS-I
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472 AMLERQ-CNNGKKISSNDTPYS-------------RT-REKLELKRERKAARTLAIITGA
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473 FLICWLPFFIIALIGPF-VDPE--GIPPFARSFVLWLGYFNSLLNPIIYTIFSPEFRSAF
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474 QKILFG--KYRRG-----------------------------------------------
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475 ------------------------------------------------------------
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476 ---------------HR
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477 > 35=p A47174 serotonin receptor, 5HTlym receptor - great pond snail
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478 M-ANFTFGDLALDVARMGGLASTPSGLRSTGLTTPGLSPTG------------------L
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479 VTSDFNDSYGLTGQFINGSHSSRSR-----DNASAN-DTSATNMTDDRYWSLTVY-----
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480 --------SHEHLVLTSVILGLFVLCCIIGNCFVIAAVMLERSLHNVANYLILSLAVADL
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481 MVAVLVM-PLSVVSE-IS-KVWF--LHSEVCDMWISVDVLCCTASILHLVAIAMDRYWAV
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482 TS-IDYIRRRSARRILLMIMVVWIVALFI-SIPPLFG-WRDP--NN--DPDKTGTCIIS-
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483 -------QDKGYTIFSTVGAFYLPMLVMMIIYIRIWLVARSRIRKDKFQMTKARLKTEET
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484 TLVASPKTEYSVVSDCNGCNSPDSTTEKKKRRAPFKSYGCSPRPERKK------------
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485 ----NRAKKLPENANGVNSNSSSSERLKQIQIE-----------TAEAFANGCAEEAS-I
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486 AMLERQ-CNNGKKISSNDTPYS-------------RT-REKLELKRERKAARTLAIITGA
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487 FLICWLPFFIIALIGPF-VDPE--GIPPFARSFVLWLGYFNSLLNPIIYTIFSPEFRSAF
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488 QKILFG--KYRRG-----------------------------------------------
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489 ------------------------------------------------------------
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490 ---------------HR
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491 > 36== X95604 1 Bombyx mori serotonin receptor <antennae>[InsectBiochem.Mol.Bi
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492 M-EGAE-GQEELD----WEALYLRLPLQNCSWNSTGWEPNW------------------N
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493 VTVVPNTTW---------------------WQASAPFDTPAALVR---------------
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494 ------------AAAKAVVLGLLILATVVGNVFVIAAILLERHLRSAANNLILSLAVADL
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495 LVACLVM-PLGAVYE-VV-QRWT--LGPELCDMWTSGDVLCCTASILHLVAIALDRYWAV
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496 TN-IDYIHASTAKRVGMMIACVWTVSFFV-CIAQLLG-WKDPDWNQRVSEDL--RCVVS-
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497 -------QDVGYQIFATASSFYVPVLIILILYWRIYQTARKRIRR---------------
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498 ------------------------------RRGATARGGVGPPPVP--------------
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499 -------------AGGALVAGGGSGGIAAAVVAVIGRP---LPTISETTTTGFTNVSSNN
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500 TSPEKQSCANGLEADPPTTGYGAVAAAYYPSLVRRKP-KEAADSKRERKAAKTLAIITGA
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501 FVACWLPFFVLAILVPT-CDCE---VSPVLTSLSLWLGYFNSTLNPVIYTVFSPEFRHAF
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502 QRLLCG--RRVRRRR---------------------------------------------
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503 ------------------------------------------------------------
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504 --------------APQ