diff mafft/test/sample.dpparttree @ 18:e4d75f9efb90 draft

planemo upload commit b'4303231da9e48b2719b4429a29b72421d24310f4\n'-dirty

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/mafft/test/sample.dpparttree	Thu Feb 02 18:44:31 2017 -0500
@@ -0,0 +1,504 @@
+>     1== M63632   1 Lampetra japonica rhodopsin <>[BBRC174,1125-1132'91]
+MNG---------------------------------------------------------
+-TE--GDNFYVPF-----------------SNKTGLARSPYEYPQ---------Y-YLAE
+PWK---------YSALAAYMFFLILVGFPVNFLTLFVTVQHKKLRTPLNYILLNLAMANL
+FMVLFGF-TVTMYTS-MN-GYFV--FGPTMCSIEGFFATLGGEVALWSLVVLAIERYIVI
+CKPMGNF-RFGNTHAIMGVAFTWIMALAC-AAPPLVG-W-----SRYIPEGMQCSCGPDY
+YTLNPNFNNESYVVYMFVVHFLVPFVIIFFCYGRLLCTV----KE---------------
+------------------------------------------------------------
+-----------------------------------------------------------A
+AAAQQ---------------------------------ESASTQKAEKEVTRMVVLMVIG
+FLVCWVPYASVAFYIFT-HQGS--DFGATFMTLPAFFAKSSALYNPVIYILMNKQFRNCM
+ITTLCC-------GKNPLGD-DE---SGASTSKT------------------------EV
+SSVS--------------------------------------------------------
+------TSPVSP-A---
+>     2== U22180   1 rat opsin <rod>[J.Mol.Neurosci.5(3),207-209'94]
+MNG---------------------------------------------------------
+-TE--GPNFYVPF-----------------SNITGVVRSPFEQPQ---------Y-YLAE
+PWQ---------FSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADL
+FMVFGGF-TTTLYTS-LH-GYFV--FGPTGCNLEGFFATLGGEIGLWSLVVLAIERYVVV
+CKPMSNF-RFGENHAIMGVAFTWVMALAC-AAPPLVG-W-----SRYIPEGMQCSCGIDY
+YTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTV----KE---------------
+------------------------------------------------------------
+-----------------------------------------------------------A
+AAQQQ---------------------------------ESATTQKAEKEVTRMVIIMVIF
+FLICWLPYASVAMYIFT-HQGS--NFGPIFMTLPAFFAKTASIYNPIIYIMMNKQFRNCM
+LTSLCC-------GKNPLGD-DE---ASATASKT------------------------E-
+------------------------------------------------------------
+------TSQVAP-A---
+>     3== M92038   1 chicken green sensitive cone opsin <retina>[PNAS89,5932-5936'9
+MNG---------------------------------------------------------
+-TE--GINFYVPM-----------------SNKTGVVRSPFEYPQ---------Y-YLAE
+PWK---------YRLVCCYIFFLISTGLPINLLTLLVTFKHKKLRQPLNYILVNLAVADL
+FMACFGF-TVTFYTA-WN-GYFV--FGPVGCAVEGFFATLGGQVALWSLVVLAIERYIVV
+CKPMGNF-RFSATHAMMGIAFTWVMAFSC-AAPPLFG-W-----SRYMPEGMQCSCGPDY
+YTHNPDYHNESYVLYMFVIHFIIPVVVIFFSYGRLICKV----RE---------------
+------------------------------------------------------------
+-----------------------------------------------------------A
+AAQQQ---------------------------------ESATTQKAEKEVTRMVILMVLG
+FMLAWTPYAVVAFWIFT-NKGA--DFTATLMAVPAFFSKSSSLYNPIIYVLMNKQFRNCM
+ITTICC-------GKNPFGD-EDV-SSTVSQSKT------------------------EV
+SSVS--------------------------------------------------------
+------SSQVSP-A---
+>     4=p A45229 opsin, green-sensitive (clone GFgr-1) - goldfish
+MNG---------------------------------------------------------
+-TE--GKNFYVPM-----------------SNRTGLVRSPFEYPQ---------Y-YLAE
+PWQ---------FKILALYLFFLMSMGLPINGLTLVVTAQHKKLRQPLNFILVNLAVAGT
+IMVCFGF-TVTFYTA-IN-GYFV--LGPTGCAVEGFMATLGGEVALWSLVVLAIERYIVV
+CKPMGSF-KFSSSHAFAGIAFTWVMALAC-AAPPLFG-W-----SRYIPEGMQCSCGPDY
+YTLNPDYNNESYVIYMFVCHFILPVAVIFFTYGRLVCTV----KA---------------
+------------------------------------------------------------
+-----------------------------------------------------------A
+AAQQQ---------------------------------DSASTQKAEREVTKMVILMVFG
+FLIAWTPYATVAAWIFF-NKGA--DFSAKFMAIPAFFSKSSALYNPVIYVLLNKQFRNCM
+LTTIFC-------GKNPLGD-DE--SSTVSTSKT------------------------EV
+SS----------------------------------------------------------
+---------VSP-A---
+>     5=p B45229 opsin, green-sensitive (clone GFgr-2) - goldfish
+MNG---------------------------------------------------------
+-TE--GNNFYVPL-----------------SNRTGLVRSPFEYPQ---------Y-YLAE
+PWQ---------FKLLAVYMFFLICLGLPINGLTLICTAQHKKLRQPLNFILVNLAVAGA
+IMVCFGF-TVTFYTA-IN-GYFA--LGPTGCAVEGFMATLGGEVALWSLVVLAIERYIVV
+CKPMGSF-KFSSTHASAGIAFTWVMAMAC-AAPPLVG-W-----SRYIPEGIQCSCGPDY
+YTLNPEYNNESYVLYMFICHFILPVTIIFFTYGRLVCTV----KA---------------
+------------------------------------------------------------
+-----------------------------------------------------------A
+AAQQQ---------------------------------DSASTQKAEREVTKMVILMVLG
+FLVAWTPYATVAAWIFF-NKGA--AFSAQFMAIPAFFSKTSALYNPVIYVLLNKQFRSCM
+LTTLFC-------GKNPLGD-EE--SSTVSTSKT------------------------EV
+SS----------------------------------------------------------
+---------VSP-A---
+>     6== L11864   1 Carassius auratus blue cone opsin <retina>[Biochemistry32,208-
+MKQ---------------------------------------------------------
+-VPEFHEDFYIPIP-------------LDINNLS--AYSPFLVPQ---------D-HLGN
+QGI---------FMAMSVFMFFIFIGGASINILTILCTIQFKKLRSHLNYILVNLSIANL
+FVAIFGS-PLSFYSF-FN-RYFI--FGATACKIEGFLATLGGMVGLWSLAVVAFERWLVI
+CKPLGNF-TFKTPHAIAGCILPWISALAA-SLPPLFG-W-----SRYIPEGLQCSCGPDW
+YTTNNKYNNESYVMFLFCFCFAVPFGTIVFCYGQLLITL----KL---------------
+------------------------------------------------------------
+-----------------------------------------------------------A
+AKAQA---------------------------------DSASTQKAEREVTKMVVVMVLG
+FLVCWAPYASFSLWIVS-HRGE--EFDLRMATIPSCLSKASTVYNPVIYVLMNKQFRSCM
+M-KMVC-------GKN-IEE-DE---ASTSSQVT------------------------QV
+SS----------------------------------------------------------
+---------VAPEK---
+>     7== M13299   1 human BCP <>[Science232(4747),193-202'86]
+MRK---------------------------------------------------------
+-MS--EEEFYL------------------FKNISSV--GPWDGPQ---------Y-HIAP
+VWA---------FYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVNVSFGGF
+LLCIFSV-FPVFVAS-CN-GYFV--FGRHVCALEGFLGTVAGLVTGWSLAFLAFERYIVI
+CKPFGNF-RFSSKHALTVVLATWTIGIGV-SIPPFFG-W-----SRFIPEGLQCSCGPDW
+YTVGTKYRSESYTWFLFIFCFIVPLSLICFSYTQLLRAL----KA---------------
+------------------------------------------------------------
+-----------------------------------------------------------V
+AAQQQ---------------------------------ESATTQKAEREVSRMVVVMVGS
+FCVCYVPYAAFAMYMVN-NRNH--GLDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQACI
+M-KMVC-------GKA-MTD-ES---DTCSSQKT------------------------EV
+STVS--------------------------------------------------------
+------STQVGP-N---
+>     8=opsin, greensensitive  human (fragment) S07060
+------------------------------------------------------------
+------------------------------------------------------------
+----------------------------------------------------------DL
+AETVIAS-TISIVNQ-VS-GYFV--LGHPMCVLEGYTVSLCGITGLWSLAIISWERWLVV
+CKPFGNV-RFDAKLAIVGIAFSWIWAAVW-TAPPIFG-W-----SRYWPHGLKTSCGPDV
+FSGSSYPGVQSYMIVLMVTCCITPLSIIVLCYLQVWLAI----RA---------------
+------------------------------------------------------------
+-----------------------------------------------------------V
+AKQQK---------------------------------ESESTQKAEKEVTRMVVVMVLA
+FC----------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+-----------------
+>     9== K03494   1 human GCP <>[Science232(4747),193-202'86]
+MAQQWSLQRLA---------------------------------------GRHPQDSYED
+STQ--SSIFTYTN-----------------SNST---RGPFEGPN---------Y-HIAP
+RWV---------YHLTSVWMIFVVIASVFTNGLVLAATMKFKKLRHPLNWILVNLAVADL
+AETVIAS-TISVVNQ-VY-GYFV--LGHPMCVLEGYTVSLCGITGLWSLAIISWERWMVV
+CKPFGNV-RFDAKLAIVGIAFSWIWAAVW-TAPPIFG-W-----SRYWPHGLKTSCGPDV
+FSGSSYPGVQSYMIVLMVTCCITPLSIIVLCYLQVWLAI----RA---------------
+------------------------------------------------------------
+-----------------------------------------------------------V
+AKQQK---------------------------------ESESTQKAEKEVTRMVVVMVLA
+FCFCWGPYAFFACFAAA-NPGY--PFHPLMAALPAFFAKSATIYNPVIYVFMNRQFRNCI
+LQLF---------GKK-VDD-GS---ELSSASKT------------------------EV
+SSV---------------------------------------------------------
+-------SSVSP-A---
+>    10== Z68193   1 human Red Opsin <>[]
+MAQQWSLQRLA---------------------------------------GRHPQDSYED
+STQ--SSIFTYTN-----------------SNST---RGPFEGPN---------Y-HIAP
+RWV---------YHLTSVWMIFVVTASVFTNGLVLAATMKFKKLRHPLNWILVNLAVADL
+AETVIAS-TISIVNQ-VS-GYFV--LGHPMCVLEGYTVSLCGITGLWSLAIISWERWLVV
+CKPFGNV-RFDAKLAIVGIAFSWIWSAVW-TAPPIFG-W-----SRYWPHGLKTSCGPDV
+FSGSSYPGVQSYMIVLMVTCCIIPLAIIMLCYLQVWLAI----RA---------------
+------------------------------------------------------------
+-----------------------------------------------------------V
+AKQQK---------------------------------ESESTQKAEKEVTRMVVVMIFA
+YCVCWGPYTFFACFAAA-NPGY--AFHPLMAALPAYFAKSATIYNPVIYVFMNRQFRNCI
+LQLF---------GKK-VDD-GS---ELSSASKT------------------------EV
+SSV---------------------------------------------------------
+-------SSVSP-A---
+>    11== M92036   1 Gecko gecko P521 <retina>[PNAS89,6841-6845'92]
+MTEAWNVAVFA---------------------------------------ARRSRDD-DD
+TTR--GSVFTYTN-----------------TNNT---RGPFEGPN---------Y-HIAP
+RWV---------YNLVSFFMIIVVIASCFTNGLVLVATAKFKKLRHPLNWILVNLAFVDL
+VETLVAS-TISVFNQ-IF-GYFI--LGHPLCVIEGYVVSSCGITGLWSLAIISWERWFVV
+CKPFGNI-KFDSKLAIIGIVFSWVWAWGW-SAPPIFG-W-----SRYWPHGLKTSCGPDV
+FSGSVELGCQSFMLTLMITCCFLPLFIIIVCYLQVWMAI----RA---------------
+------------------------------------------------------------
+-----------------------------------------------------------V
+AAQQK---------------------------------ESESTQKAEREVSRMVVVMIVA
+FCICWGPYASFVSFAAA-NPGY--AFHPLAAALPAYFAKSATIYNPVIYVFMNRQFRNCI
+MQLF---------GKK-VDD-GS---EASTTSRT------------------------EV
+SSVS--------------------------------------------------------
+------NSSVAP-A---
+>    12== M62903   1 chicken visual pigment <>[BBRC173,1212-1217'90]
+MAA-WEAAFAA---------------------------------------RRRHEE--ED
+TTR--DSVFTYTN-----------------SNNT---RGPFEGPN---------Y-HIAP
+RWV---------YNLTSVWMIFVVAASVFTNGLVLVATWKFKKLRHPLNWILVNLAVADL
+GETVIAS-TISVINQ-IS-GYFI--LGHPMCVVEGYTVSACGITALWSLAIISWERWFVV
+CKPFGNI-KFDGKLAVAGILFSWLWSCAW-TAPPIFG-W-----SRYWPHGLKTSCGPDV
+FSGSSDPGVQSYMVVLMVTCCFFPLAIIILCYLQVWLAI----RA---------------
+------------------------------------------------------------
+-----------------------------------------------------------V
+AAQQK---------------------------------ESESTQKAEKEVSRMVVVMIVA
+YCFCWGPYTFFACFAAA-NPGY--AFHPLAAALPAYFAKSATIYNPIIYVFMNRQFRNCI
+LQLF---------GKK-VDD-GS---EVST-SRT------------------------EV
+SSVS--------------------------------------------------------
+------NSSVSP-A---
+>    13== S75720   1 chicken P-opsin <>[Science267(5203),1502-1506'95]
+MS--------------------------------------------------------SN
+SSQ--AP-----------------------PNGT---PGPFDGPQ---------WPYQAP
+QST---------YVGVAVLMGTVVACASVVNGLVIVVSICYKKLRSPLNYILVNLAVADL
+LVTLCGS-SVSLSNN-IN-GFFV--FGRRMCELEGFMVSLTGIVGLWSLAILALERYVVV
+CKPLGDF-QFQRRHAVSGCAFTWGWALLW-SAPPLLG-W-----SSYVPEGLRTSCGPNW
+YTGGSNN--NSYILSLFVTCFVLPLSLILFSYTNLLLTL----RA---------------
+------------------------------------------------------------
+-----------------------------------------------------------A
+AAQQK---------------------------------EADTTQRAEREVTRMVIVMVMA
+FLLCWLPYSTFALVVAT-HKGI--IIQPVLASLPSYFSKTATVYNPIIYVFMNKQFQSCL
+LEMLCC----GYQPQR-TGK-AS---PGTPGPHA------------------------DV
+TAAG--------------------------------------------------------
+-----LRNKVMP-AHPV
+>    14== M17718   1 D.melanogaster Rh3 <>[J.Neurosci.7,1550-1557'87]
+MESGNV-----------------------------------------------SSSLFGN
+VSTALRPEARLSA---------ETRLLGW--------NVPPEELR-----------HIPE
+HWLTYPEPPESMNYLLGTLYIFFTLMSMLGNGLVIWVFSAAKSLRTPSNILVINLAFCDF
+-MMMVKT-PIFIYNS-FH-QGYA--LGHLGCQIFGIIGSYTGIAAGATNAFIAYDRFNVI
+TRPMEGK--MTHGKAIAMIIFIYMYATPW-VVACYTETW-----GRFVPEGYLTSCTFDY
+LT--DNFDTRLFVACIFFFSFVCPTTMITYYYSQIVGHVFSHEKA---------------
+------------------------------------------------------------
+-----------------------------------------------------------L
+RDQAKK--------------------MNVESL---RSNVDKNKETAEIRIAKAAITICFL
+FFCSWTPYGVMSLIGAF-GDKT--LLTPGATMIPACACKMVACIDPFVYAISHPRYRMEL
+QKRCPW----LALNEKAPES--SAVASTSTTQEP------------------------QQ
+T-----------------------------------------------------------
+----------TA-A---
+>    15== X65879   1 Drosophila pseudoobscura Dpse\Rh3 <>[Genetics132(1),193-204'92
+MEYHNV-----------------------------------------------SSVL-GN
+VSSVLRPDARLSA---------ESRLLGW--------NVPPDELR-----------HIPE
+HWLIYPEPPESMNYLLGTLYIFFTVISMIGNGLVMWVFSAAKSLRTPSNILVINLAFCDF
+-MMMIKT-PIFIYNS-FH-QGYA--LGHLGCQIFGVIGSYTGIAAGATNAFIAYDRYNVI
+TRPMEGK--MTHGKAIAMIIFIYLYATPW-VVACYTESW-----GRFVPEGYLTSCTFDY
+LT--DNFDTRLFVACIFFFSFVCPTTMITYYYSQIVGHVFSHEKA---------------
+------------------------------------------------------------
+-----------------------------------------------------------L
+RDQAKK--------------------MNVDSL---RSNVDKSKEAAEIRIAKAAITICFL
+FFASWTPYGVMSLIGAF-GDKT--LLTPGATMIPACTCKMVACIDPFVYAISHPRYRMEL
+QKRCPW----LAISEKAPES--RAAISTSTTQEQ------------------------QQ
+T-----------------------------------------------------------
+----------TA-A---
+>    16== M17730   1 D.melanogaster Rh4 opsin <>[J.Neurosci.7,1558-1566'87]
+ME-----------------------------------------------------PLCNA
+SEPPLRPEAR-SSG------NGDLQFLGW--------NVPPDQIQ-----------YIPE
+HWLTQLEPPASMHYMLGVFYIFLFCASTVGNGMVIWIFSTSKSLRTPSNMFVLNLAVFDL
+-IMCLKA-PIF--NS-FH-RGFAIYLGNTWCQIFASIGSYSGIGAGMTNAAIGYDRYNVI
+TKPMNRN--MTFTKAVIMNIIIWLYCTPW-VVLPLTQFW-----DRFVPEGYLTSCSFDY
+LS--DNFDTRLFVGTIFFFSFVCPTLMILYYYSQIVGHVFSHEKA---------------
+------------------------------------------------------------
+-----------------------------------------------------------L
+REQAKK--------------------MNVESL---RSNVDKSKETAEIRIAKAAITICFL
+FFVSWTPYGVMSLIGAF-GDKS--LLTQGATMIPACTCKLVACIDPFVYAISHPRYRLEL
+QKRCPW----LGVNEKSGEI--SSAQST-TTQEQ------------------------QQ
+T-----------------------------------------------------------
+----------TA-A---
+>    17== X65880   1 Drosophila pseudoobscura Dpse\Rh4 <>[Genetics132(1),193-204'92
+MD-----------------------------------------------------ALCNA
+SEPPLRPEARMSSG------SDELQFLGW--------NVPPDQIQ-----------YIPE
+HWLTQLEPPASMHYMLGVFYIFLFFASTLGNGMVIWIFSTSKSLRTPSNMFVLNLAVFDL
+-IMCLKA-PIFIYNS-FH-RGFA--LGNTWCQIFASIGSYSGIGAGMTNAAIGYDRYNVI
+TKPMNRN--MTFTKAVIMNIIIWLYCTPW-VVLPLTQFW-----DRFVPEGYLTSCSFDY
+LS--DNFDTRLFVGTIFLFSFVVPTLMILYYYSQIVGHVFNHEKA---------------
+------------------------------------------------------------
+-----------------------------------------------------------L
+REQAKK--------------------MNVESL---RSNVDKSKETAEIRIAKAAITICFL
+FFVSWTPYGVMSLIGAF-GDKS--LLTPGATMIPACTCKLVACIEPFVYAISHPRYRMEL
+QKRCPW----LGVNEKSGEA--SSAQST-TTQEQ-----------------------TQQ
+T-----------------------------------------------------------
+----------SA-A---
+>    18== D50584   1 Hemigrapsus sanguineus opsin BcRh2 <compound eye>[J.Exp.Biol.1
+MT----------------------------------------------------------
+--NATGPQMAYYGA------ASMD-F-GYPEGVSIVDFVRPEIKP-----------YVHQ
+HWYNYPPVNPMWHYLLGVIYLFLGTVSIFGNGLVIYLFNKSAALRTPANILVVNLALSDL
+IMLTTNV-PFFTYNC-FSGGVWM--FSPQYCEIYACLGAITGVCSIWLLCMISFDRYNII
+CNGFNGP-KLTTGKAVVFALISWVIAIGC-ALPPFFG-W-----GNYILEGILDSCSYDY
+LT--QDFNTFSYNIFIFVFDYFLPAAIIVFSYVFIVKAIFAHEAA---------------
+------------------------------------------------------------
+-----------------------------------------------------------M
+RAQAKK--------------------MNVSTL---RS-NEADAQRAEIRIAKTALVNVSL
+WFICWTPYALISLKGVM-GDTS--GITPLVSTLPALLAKSCSCYNPFVYAISHPKYRLAI
+TQHLPW----FCVHETETKS-NDDSQSNSTVAQ---------------------------
+------------------------------------------------------------
+----------DK-A---
+>    19== D50583   1 Hemigrapsus sanguineus opsin BcRh1 <compound eye>[J.Exp.Biol.1
+MA----------------------------------------------------------
+--NVTGPQMAFYGS------GAAT-F-GYPEGMTVADFVPDRVKH-----------MVLD
+HWYNYPPVNPMWHYLLGVVYLFLGVISIAGNGLVIYLYMKSQALKTPANMLIVNLALSDL
+IMLTTNF-PPFCYNC-FSGGRWM--FSGTYCEIYAALGAITGVCSIWTLCMISFDRYNII
+CNGFNGP-KLTQGKATFMCGLAWVISVGW-SLPPFFG-W-----GSYTLEGILDSCSYDY
+FT--RDMNTITYNICIFIFDFFLPASVIVFSYVFIVKAIFAHEAA---------------
+------------------------------------------------------------
+-----------------------------------------------------------M
+RAQAKK--------------------MNVTNL---RS-NEAETQRAEIRIAKTALVNVSL
+WFICWTPYAAITIQGLL-GNAE--GITPLLTTLPALLAKSCSCYNPFVYAISHPKFRLAI
+TQHLPW----FCVHEKDPND-VEENQSSNTQTQ---------------------------
+------------------------------------------------------------
+----------EK-S---
+>    20== K02320   1 D.melanogaster opsin <>[Cell40,851-858'85]
+ME------------------------------------------------------SFAV
+AAAQLGPHFAPLS------------------NGSVVDKVTPDMAH-----------LISP
+YWNQFPAMDPIWAKILTAYMIMIGMISWCGNGVVIYIFATTKSLRTPANLLVINLAISDF
+GIMITNT-PMMGINL-YF-ETWV--LGPMMCDIYAGLGSAFGCSSIWSMCMISLDRYQVI
+VKGMAGR-PMTIPLALGKM---------------------------YVPEGNLTSCGIDY
+LE--RDWNPRSYLIFYSIFVYYIPLFLICYSYWFIIAAVSAHEKA---------------
+------------------------------------------------------------
+-----------------------------------------------------------M
+REQAKK--------------------MNVKSL---RS-SEDAEKSAEGKLAKVALVTITL
+WFMAWTPYLVINCMGLF-KF-E--GLTPLNTIWGACFAKSAACYNPIVYGISHPKYRLAL
+KEKCPC----CVFGKVDDGK-SSDAQSQATASEA------------------------E-
+------------------------------------------------------------
+----------SK-A---
+>    21== K02315   1 D.melanogaster ninaE <>[Cell40,839-850'85]
+ME------------------------------------------------------SFAV
+AAAQLGPHFAPLS------------------NGSVVDKVTPDMAH-----------LISP
+YWNQFPAMDPIWAKILTAYMIMIGMISWCGNGVVIYIFATTKSLRTPANLLVINLAISDF
+GIMITNT-PMMGINL-YF-ETWV--LGPMMCDIYAGLGSAFGCSSIWSMCMISLDRYQVI
+VKGMAGR-PMTIPLALGKIAYIWFMSSIW-CLAPAFG-W-----SRYVPEGNLTSCGIDY
+LE--RDWNPRSYLIFYSIFVYYIPLFLICYSYWFIIAAVSAHEKA---------------
+------------------------------------------------------------
+-----------------------------------------------------------M
+REQAKK--------------------MNVKSL---RS-SEDAEKSAEGKLAKVALVTITL
+WFMAWTPYLVINCMGLF-KF-E--GLTPLNTIWGACFAKSAACYNPIVYGISHPKYRLAL
+KEKCPC----CVFGKVDDGK-SSDAQSQATASEA------------------------E-
+------------------------------------------------------------
+----------SK-A---
+>    22== X65877   1 Drosophila pseudoobscura Dpse\ninaE <>[Genetics132(1),193-204'
+MD------------------------------------------------------SFAA
+VATQLGPQFAAPS------------------NGSVVDKVTPDMAH-----------LISP
+YWDQFPAMDPIWAKILTAYMIIIGMISWCGNGVVIYIFATTKSLRTPANLLVINLAISDF
+GIMITNT-PMMGINL-YF-ETWV--LGPMMCDIYAGLGSAFGCSSIWSMCMISLDRYQVI
+VKGMAGR-PMTIPLALGKIAYIWFMSTIWCCLAPVFG-W-----SRYVPEGNLTSCGIDY
+LE--RDWNPRSYLIFYSIFVYYIPLFLICYSYWFIIAAVSAHEKA---------------
+------------------------------------------------------------
+-----------------------------------------------------------M
+REQAKK--------------------MNVKSL---RS-SEDADKSAEGKLAKVALVTISL
+WFMAWTPYLVINCMGLF-KF-E--GLTPLNTIWGACFAKSAACYNPIVYGISHPKYRLAL
+KEKCPC----CVFGKVDDGK-SSEAQSQATTSEA------------------------E-
+------------------------------------------------------------
+----------SK-A---
+>    23== M12896   1 D.melanogaster Rh2 <>[Cell44,705-710'86]
+MERSHL-------------------------------------------------PETPF
+DLAHSGPRFQAQSS------G----------NGSVLDNVLPDMAH-----------LVNP
+YWSRFAPMDPMMSKILGLFTLAIMIISCCGNGVVVYIFGGTKSLRTPANLLVLNLAFSDF
+CMMASQS-PVMIINF-YY-ETWV--LGPLWCDIYAGCGSLFGCVSIWSMCMIAFDRYNVI
+VKGINGT-PMTIKTSIMKILFIWMMAVFW-TVMPLIG-W-----SAYVPEGNLTACSIDY
+MT--RMWNPRSYLITYSLFVYYTPLFLICYSYWFIIAAVAAHEKA---------------
+------------------------------------------------------------
+-----------------------------------------------------------M
+REQAKK--------------------MNVKSL---RS-SEDCDKSAEGKLAKVALTTISL
+WFMAWTPYLVICYFGLF-KI-D--GLTPLTTIWGATFAKTSAVYNPIVYGISHPKYRIVL
+KEKCPM----CVFGNTDEPKPDAPASDTETTSEA------------------------D-
+------------------------------------------------------------
+----------SK-A---
+>    24== X65878   1 Drosophila pseudoobscura Dpse\Rh2 <>[Genetics132(1),193-204'92
+MERSLL-------------------------------------------------PEPPL
+AMALLGPRFEAQTG------G----------NRSVLDNVLPDMAP-----------LVNP
+HWSRFAPMDPTMSKILGLFTLVILIISCCGNGVVVYIFGGTKSLRTPANLLVLNLAFSDF
+CMMASQS-PVMIINF-YY-ETWV--LGPLWCDIYAACGSLFGCVSIWSMCMIAFDRYNVI
+VKGINGT-PMTIKTSIMKIAFIWMMAVFW-TIMPLIG-W-----SSYVPEGNLTACSIDY
+MT--RQWNPRSYLITYSLFVYYTPLFMICYSYWFIIATVAAHEKA---------------
+------------------------------------------------------------
+-----------------------------------------------------------M
+RDQAKK--------------------MNVKSL---RS-SEDCDKSAENKLAKVALTTISL
+WFMAWTPYLIICYFGLF-KI-D--GLTPLTTIWGATFAKTSAVYNPIVYGISHPNDRLVL
+KEKCPM----CVCGTTDEPKPDAPPSDTETTSEA------------------------E-
+------------------------------------------------------------
+----------SK-D---
+>    25== U26026   1 Apis mellifera long-wavelength rhodopsin <>[]
+MI----------------------------------------------------------
+--AVSGPSYEAFSY------GGQARF----NNQTVVDKVPPDMLH-----------LIDA
+NWYQYPPLNPMWHGILGFVIGMLGFVSAMGNGMVVYIFLSTKSLRTPSNLFVINLAISNF
+LMMFCMS-PPMVINC-YY-ETWV--LGPLFCQIYAMLGSLFGCGSIWTMTMIAFDRYNVI
+VKGLSGK-PLSINGALIRIIAIWLFSLGW-TIAPMFG-W-----NRYVPEGNMTACGTDY
+FN--RGLLSASYLVCYGIWVYFVPLFLIIYSYWFIIQAVAAHEKN---------------
+------------------------------------------------------------
+-----------------------------------------------------------M
+REQAKK--------------------MNVASL---RS-SENQNTSAECKLAKVALMTISL
+WFMAWTPYLVINFSGIF-NL-V--KISPLFTIWGSLFAKANAVYNPIVYGISHPKYRAAL
+FAKFPS----LAC-AAEPSS-DAVSTTSGTTTVT------------------------DN
+EK----------------------------------------------------------
+----------SN-A---
+>    26== L03781   1 Limulus polyphemus opsin <>[PNAS90,6150-6154'93]
+M-----------------------------------------------------------
+---ANQLSYSSLGW------PYQP-------NASVVDTMPKEMLY-----------MIHE
+HWYAFPPMNPLWYSILGVAMIILGIICVLGNGMVIYLMMTTKSLRTPTNLLVVNLAFSDF
+CMMAFMM-PTMTSNC-FA-ETWI--LGPFMCEVYGMAGSLFGCASIWSMVMITLDRYNVI
+VRGMAAA-PLTHKKATLLLLFVWIWSGGW-TILPFFG-W-----SRYVPEGNLTSCTVDY
+LT--KDWSSASYVVIYGLAVYFLPLITMIYCYFFIVHAVAEHEKQ---------------
+------------------------------------------------------------
+-----------------------------------------------------------L
+REQAKK--------------------MNVASL---RANADQQKQSAECRLAKVAMMTVGL
+WFMAWTPYLIISWAGVF-SSGT--RLTPLATIWGSVFAKANSCYNPIVYGISHPRYKAAL
+YQRFPS----LACGSGESGS-DVKSEASATTTME------------------------EK
+PK----------------------------------------------------------
+---------IPE-A---
+>    27== X07797   1 Octopus dofleini rhodopsin <>[FEBS232(1),69-72'88]
+MVESTTL--------------------------------------------VNQ------
+---------------------------TWWYNPTVD---------------------IHP
+HWAKFDPIPDAVYYSVGIFIGVVGIIGILGNGVVIYLFSKTKSLQTPANMFIINLAMSDL
+SFSAINGFPLKTISA-FM-KKWI--FGKVACQLYGLLGGIFGFMSINTMAMISIDRYNVI
+GRPMAASKKMSHRRAFLMIIFVWMWSIVW-SVGPVFN-W-----GAYVPEGILTSCSFDY
+LS--TDPSTRSFILCMYFCGFMLPIIIIAFCYFNIVMSVSNHEKE---------------
+------------------------------------------------------------
+-----------------------------------------------------------M
+AAMAKR--------------------LNAKEL---RK--AQAGASAEMKLAKISMVIITQ
+FMLSWSPYAIIALLAQF-GPAE--WVTPYAAELPVLFAKASAIHNPIVYSVSHPKFREAI
+QTTFPWLLTCCQFDEKECED-ANDAEEEVVASER--GGESRDAAQMKEMMAMMQKMQAQQ
+AAYQPPPPPQGY--PPQGYPPQGAYPPPQGYPPQGYPPQGYPPQGYPPQGAPPQVEAPQG
+APPQGVDNQAYQ-A---
+>    28== X70498   1 Todarodes pacificus rhodopsin <retina>[FEBS317(1-2),5-11'93]
+MGRDLR---------------------------------------------DNE------
+---------------------------TWWYNPSIV---------------------VHP
+HWREFDQVPDAVYYSLGIFIGICGIIGCGGNGIVIYLFTKTKSLQTPANMFIINLAFSDF
+TFSLVNGFPLMTISC-FL-KKWI--FGFAACKVYGFIGGIFGFMSIMTMAMISIDRYNVI
+GRPMAASKKMSHRRAFIMIIFVWLWSVLW-AIGPIFG-W-----GAYTLEGVLCNCSFDY
+IS--RDSTTRSNILCMFILGFFGPILIIFFCYFNIVMSVSNHEKE---------------
+------------------------------------------------------------
+-----------------------------------------------------------M
+AAMAKR--------------------LNAKEL---RK--AQAGANAEMRLAKISIVIVSQ
+FLLSWSPYAVVALLAQF-GPLE--WVTPYAAQLPVMFAKASAIHNPMIYSVSHPKFREAI
+SQTFPWVLTCCQFDDKETED-DKDAETEIPAGESSDAAPSADAAQMKEMMAMMQKMQQQQ
+AAY----PPQGYAPPPQGYPPQGY--PPQGYPPQGYPPQGYPP---PPQGAPPQ-GAPPA
+APPQGVDNQAYQ-A---
+>    29== L21195   1 human serotonin 5-HT7 receptor protein <placenta and fetal bra
+MMDVNSSGRPDLY----GHLRSFLLP--EVGRGLPDLSPDGGADPVAGSWAPHLLS---E
+VTASPAPTW----------------------------DAPPDNAS--GCGEQINY-----
+--------GRVEKVVIGSILTLITLLTIAGNCLVVISVCFVKKLRQPSNYLIVSLALADL
+SVAVAVM-PFVSVTDLIG-GKWI--FGHFFCNVFIAMDVMCCTASIMTLCVISIDRYLGI
+TRPLTYPVRQNGKCMAKMILSVWLLSASI-TLPPLFG-W-----AQNVNDDK--VCLIS-
+-------QDFGYTIYSTAVAFYIPMSVMLFMYYQIYKAARKSAAKHKF------------
+-----PGF---------------------------------PRVEPDSVI----------
+------------ALNGIVK----------------------LQKEVEECAN--------L
+SRLLKH-----------------------------ER-KNISIFKREQKAATTLGIIVGA
+FTVCWLPFFLLSTARPFICGTSCSCIPLWVERTFLWLGYANSLINPFIYAFFNRDLRTTY
+RSLLQC--QYRNINRK---------LSAAGMHEA---------------LKLAERP--ER
+PEFVLQ------------------------------------------------------
+-----NADYCRKKGHDS
+>    30== L15228   1 rat 5HT-7 serotonin receptor <>[JBC268,18200-18204'93]
+M--------------------------------------------------PHLLSGFLE
+VTASPAPTW----------------------------DAPPDNVS--GCGEQINY-----
+--------GRVEKVVIGSILTLITLLTIAGNCLVVISVSFVKKLRQPSNYLIVSLALADL
+SVAVAVM-PFVSVTDLIG-GKWI--FGHFFCNVFIAMDVMCCTASIMTLCVISIDRYLGI
+TRPLTYPVRQNGKCMAKMILSVWLLSASI-TLPPLFG-W-----AQNVNDDK--VCLIS-
+-------QDFGYTIYSTAVAFYIPMSVMLFMYYQIYKAARKSAAKHKF------------
+-----PGF---------------------------------PRVQPESVI----------
+------------SLNGVVK----------------------LQKEVEECAN--------L
+SRLLKH-----------------------------ER-KNISIFKREQKAATTLGIIVGA
+FTVCWLPFFLLSTARPFICGTSCSCIPLWVERTCLWLGYANSLINPFIYAFFNRDLRPTS
+RSLLQC--QYRNINRK---------LSAAGMHEA---------------LKLAERP--ER
+SEFVLQ------------------------------------------------------
+-----NSDHCGKKGHDT
+>    31=p A47425 serotonin receptor 5HT-7 - rat
+M--------------------------------------------------PHLLSGFLE
+VTASPAPTW----------------------------DAPPDNVS--GCGEQINY-----
+--------GRVEKVVIGSILTLITLLTIAGNCLVVISVSFVKKLRQPSNYLIVSLALADL
+SVAVAVM-PFVSVTDLIG-GKWI--FGHFFCNVFIAMDVMCCTASIMTLCVISIDRYLGI
+TRPLTYPVRQNGKCMAKMILSVWLLSASI-TLPPLFG-W-----AQNVNDDK--VCLIS-
+-------QDFGYTIYSTAVAFYIPMSVMLFMYYQIYKAARKSAAKHKF------------
+-----PGF---------------------------------PRVQPESVI----------
+------------SLNGVVK----------------------LQKEVEECAN--------L
+SRLLKH-----------------------------ER-KNISIFKREQKAATTLGIIVGA
+FTVCWLPFFLLSTARPFICGTSCSCIPLWVERTCLWLGYANSLINPFIYAFFNRDLRTTY
+RSLLQC--QYRNINRK---------LSAAGMHEA---------------LKLAERP--ER
+SEFVLQ------------------------------------------------------
+-----NSDHCGKKGHDT
+>    32== M83181   1 human serotonin receptor <>[JBC267(11),7553-7562'92]
+M-DVLSPGQ--------GNNTTSPPAPFETGGNTTGI-----------------------
+--SDVTVSY---------------------------------------------------
+------------QVITSLLLGTLIFCAVLGNACVVAAIALERSLQNVANYLIGSLAVTDL
+MVSVLVL-PMAALYQ-VL-NKWT--LGQVTCDLFIALDVLCCTSSILHLCAIALDRYWAI
+TDPIDYVNKRTPRRAAALISLTWLIGFLI-SIPPMLG-WRTP--EDRSDPD---ACTIS-
+-------KDHGYTIYSTFGAFYIPLLLMLVLYGRIFRAARFRIRK---------------
+------------------------TVKKVEKTGADTRHGASPAPQPKKSVNGESGSRNWR
+LGVESKAGGAL-CANGAVRQGDDGAALEVIEVHRVGNSKEHLPLPSEAGPTPCAP-----
+ASFERK-----------NERNA-------------EA-KRKMALARERKTVKTLGIIMGT
+FILCWLPFFIVALVLPF-CESSC-HMPTLLGAIINWLGYSNSLLNPVIYAYFNKDFQNAF
+KKIIKC--KFCR------------------------------------------------
+------------------------------------------------------------
+----------------Q
+>    33=p A35181 serotonin receptor class 1A - rat
+M-DVFSFGQ--------GNNTTASQEPFGTGGNVTSI-----------------------
+--SDVTFSY---------------------------------------------------
+------------QVITSLLLGTLIFCAVLGNACVVAAIALERSLQNVANYLIGSLAVTDL
+MVSVLVL-PMAALYQ-VL-NKWT--LGQVTCDLFIALDVLCCTSSILHLCAIALDRYWAI
+TDPIDYVNKRTPRRAAALISLTWLIGFLI-SIPPMLG-WRTP--EDRSDPD---ACTIS-
+-------KDHGYTIYSTFGAFYIPLLLMLVLYGRIFRAARFRIRK---------------
+------------------------TVRKVEKKGAGTSLGTSSAPPPKKSLNGQPGSGDWR
+RCAENRAVGTP-CTNGAVRQGDDEATLEVIEVHRVGNSKEHLPLPSESGSNSYAP-----
+ACLERK-----------NERNA-------------EA-KRKMALARERKTVKTLGIIMGT
+FILCWLPFFIVALVLPF-CESSC-HMPALLGAIINWLGYSNSLLNPVIYAYFNKDFQNAF
+KKIIKC--KFCR------------------------------------------------
+------------------------------------------------------------
+----------------R
+>    34== L06803   1 Lymnaea stagnalis serotonin receptor <>[PNAS90,11-15'93]
+M-ANFTFGDLALDVARMGGLASTPSGLRSTGLTTPGLSPTG------------------L
+VTSDFNDSYGLTGQFINGSHSSRSR-----DNASAN-DTSATNMTDDRYWSLTVY-----
+--------SHEHLVLTSVILGLFVLCCIIGNCFVIAAVMLERSLHNVANYLILSLAVADL
+MVAVLVM-PLSVVSE-IS-KVWF--LHSEVCDMWISVDVLCCTASILHLVAIAMDRYWAV
+TS-IDYIRRRSARRILLMIMVVWIVALFI-SIPPLFG-WRDP--NN--DPDKTGTCIIS-
+-------QDKGYTIFSTVGAFYLPMLVMMIIYIRIWLVARSRIRKDKFQMTKARLKTEET
+TLVASPKTEYSVVSDCNGCNSPDSTTEKKKRRAPFKSYGCSPRPERKK------------
+----NRAKKLPENANGVNSNSSSSERLKQIQIE-----------TAEAFANGCAEEAS-I
+AMLERQ-CNNGKKISSNDTPYS-------------RT-REKLELKRERKAARTLAIITGA
+FLICWLPFFIIALIGPF-VDPE--GIPPFARSFVLWLGYFNSLLNPIIYTIFSPEFRSAF
+QKILFG--KYRRG-----------------------------------------------
+------------------------------------------------------------
+---------------HR
+>    35=p A47174 serotonin receptor, 5HTlym receptor - great pond snail
+M-ANFTFGDLALDVARMGGLASTPSGLRSTGLTTPGLSPTG------------------L
+VTSDFNDSYGLTGQFINGSHSSRSR-----DNASAN-DTSATNMTDDRYWSLTVY-----
+--------SHEHLVLTSVILGLFVLCCIIGNCFVIAAVMLERSLHNVANYLILSLAVADL
+MVAVLVM-PLSVVSE-IS-KVWF--LHSEVCDMWISVDVLCCTASILHLVAIAMDRYWAV
+TS-IDYIRRRSARRILLMIMVVWIVALFI-SIPPLFG-WRDP--NN--DPDKTGTCIIS-
+-------QDKGYTIFSTVGAFYLPMLVMMIIYIRIWLVARSRIRKDKFQMTKARLKTEET
+TLVASPKTEYSVVSDCNGCNSPDSTTEKKKRRAPFKSYGCSPRPERKK------------
+----NRAKKLPENANGVNSNSSSSERLKQIQIE-----------TAEAFANGCAEEAS-I
+AMLERQ-CNNGKKISSNDTPYS-------------RT-REKLELKRERKAARTLAIITGA
+FLICWLPFFIIALIGPF-VDPE--GIPPFARSFVLWLGYFNSLLNPIIYTIFSPEFRSAF
+QKILFG--KYRRG-----------------------------------------------
+------------------------------------------------------------
+---------------HR
+>    36== X95604   1 Bombyx mori serotonin receptor <antennae>[InsectBiochem.Mol.Bi
+M-EGAE-GQEELD----WEALYLRLPLQNCSWNSTGWEPNW------------------N
+VTVVPNTTW---------------------WQASAPFDTPAALVR---------------
+------------AAAKAVVLGLLILATVVGNVFVIAAILLERHLRSAANNLILSLAVADL
+LVACLVM-PLGAVYE-VV-QRWT--LGPELCDMWTSGDVLCCTASILHLVAIALDRYWAV
+TN-IDYIHASTAKRVGMMIACVWTVSFFV-CIAQLLG-WKDPDWNQRVSEDL--RCVVS-
+-------QDVGYQIFATASSFYVPVLIILILYWRIYQTARKRIRR---------------
+------------------------------RRGATARGGVGPPPVP--------------
+-------------AGGALVAGGGSGGIAAAVVAVIGRP---LPTISETTTTGFTNVSSNN
+TSPEKQSCANGLEADPPTTGYGAVAAAYYPSLVRRKP-KEAADSKRERKAAKTLAIITGA
+FVACWLPFFVLAILVPT-CDCE---VSPVLTSLSLWLGYFNSTLNPVIYTVFSPEFRHAF
+QRLLCG--RRVRRRR---------------------------------------------
+------------------------------------------------------------
+--------------APQ