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annotate tool_dependencies.xml @ 23:20d78baf0806 draft

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planemo upload for repository https://github.com/galaxyproject/dunovo commit b'3eab56b30cc9d644798a290017bcc1188f028af8\n'-dirty
author nick
date Fri, 03 Feb 2017 15:54:34 -0500
parents 8ef925264516
children 8f7aa0a4359b
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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3 <package name="bowtie2" version="2.1.0">
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4 <repository changeset_revision="606d435a57a4" name="package_bowtie2_2_1_0" owner="devteam" toolshed="https://testtoolshed.g2.bx.psu.edu" />
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5 </package>
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6 <package name="samtools" version="0.1.18">
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7 <repository changeset_revision="f499719dad6e" name="package_samtools_0_1_18" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
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8 </package>
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9 <package name="mafft" version="7.221">
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10 <repository changeset_revision="dd4a533a0e3c" name="mafft" owner="rnateam" toolshed="https://testtoolshed.g2.bx.psu.edu" />
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11 </package>
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12 <package name="networkx" version="1.10">
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13 <repository changeset_revision="3469a6858fd4" name="package_networkx_1_10" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
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14 </package>
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15 <package name="duplex" version="0.6">
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16 <install version="1.0">
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17 <actions>
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18 <action sha256sum="bcfe5bc066545888da14779bc48941bd6a2f147d57fd0f851d82e495adade48f" type="download_by_url">https://github.com/galaxyproject/dunovo/archive/v0.5.tar.gz</action>
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19 <action type="shell_command">make</action>
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20 <action type="move_directory_files">
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21 <source_directory>.</source_directory>
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22 <destination_directory>$INSTALL_DIR</destination_directory>
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23 </action>
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24 <action type="set_environment">
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25 <environment_variable action="set_to" name="DUPLEX_DIR">$INSTALL_DIR</environment_variable>
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26 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR</environment_variable>
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27 </action>
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28 </actions>
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29 </install>
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30 </package>
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31 </tool_dependency>