view tool_dependencies.xml @ 23:20d78baf0806 draft

planemo upload for repository https://github.com/galaxyproject/dunovo commit b'3eab56b30cc9d644798a290017bcc1188f028af8\n'-dirty

<?xml version="1.0"?>
<tool_dependency>
  <package name="bowtie2" version="2.1.0">
    <repository changeset_revision="606d435a57a4" name="package_bowtie2_2_1_0" owner="devteam" toolshed="https://testtoolshed.g2.bx.psu.edu" />
  </package>
  <package name="samtools" version="0.1.18">
    <repository changeset_revision="f499719dad6e" name="package_samtools_0_1_18" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
  </package>
  <package name="mafft" version="7.221">
    <repository changeset_revision="dd4a533a0e3c" name="mafft" owner="rnateam" toolshed="https://testtoolshed.g2.bx.psu.edu" />
  </package>
  <package name="networkx" version="1.10">
    <repository changeset_revision="3469a6858fd4" name="package_networkx_1_10" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
  </package>
  <package name="duplex" version="0.6">
    <install version="1.0">
      <actions>
        <action sha256sum="bcfe5bc066545888da14779bc48941bd6a2f147d57fd0f851d82e495adade48f" type="download_by_url">https://github.com/galaxyproject/dunovo/archive/v0.5.tar.gz</action>
        <action type="shell_command">make</action>
        <action type="move_directory_files">
          <source_directory>.</source_directory>
          <destination_directory>$INSTALL_DIR</destination_directory>
        </action>
        <action type="set_environment">
          <environment_variable action="set_to" name="DUPLEX_DIR">$INSTALL_DIR</environment_variable>
          <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR</environment_variable>
        </action>
      </actions>
    </install>
  </package>
</tool_dependency>