Mercurial > repos > mzytnicki > s_mart
changeset 113:15bcd04d07be draft
Uploaded
| author | mzytnicki |
|---|---|
| date | Wed, 24 Apr 2013 06:28:21 -0400 |
| parents | c181ca344322 |
| children | b9257017f6ba |
| files | tool_dependencies.xml |
| diffstat | 1 files changed, 1 insertions(+), 10 deletions(-) [+] |
line wrap: on
line diff
--- a/tool_dependencies.xml Wed Apr 24 06:24:45 2013 -0400 +++ b/tool_dependencies.xml Wed Apr 24 06:28:21 2013 -0400 @@ -3,16 +3,7 @@ <set_environment version="1.0"> <environment_variable name="PYTHONPATH" action="set_to">$REPOSITORY_INSTALL_DIR</environment_variable> </set_environment> - <package name="samtools" version="0.1.12"> - <install version="1.0"> - <actions> - <action type="shell_command">R --slave --no-save --no-restore --quiet -e 'if (!require("RColorBrewer")){install.packages("RColorBrewer", repos = c("http://cran.rstudio.com/"), dependencies = TRUE)}'</action> - <action type="shell_command">R --slave --no-save --no-restore --quiet -e 'if (!require("Hmisc")){install.packages("Hmisc", repos = c("http://cran.rstudio.com/"), dependencies = TRUE)}'</action> - </actions> - </install> - <readme>Compiling SAMtools requires the ncurses and zlib development libraries.</readme> - </package> - <package name="R_PACKAGES"> + <package name="R_PACKAGES" version="1.0"> <install version="1.0"> <actions> <action type="shell_command">R --slave --no-save --no-restore --quiet -e 'if (!require("RColorBrewer")){install.packages("RColorBrewer", repos = c("http://cran.rstudio.com/"), dependencies = TRUE)}'</action>