Mercurial > repos > mzeidler > virana_main
changeset 20:ad06a6752350 draft
Uploaded
| author | mzeidler |
|---|---|
| date | Mon, 30 Sep 2013 12:04:52 -0400 |
| parents | 12ecc13c64b9 |
| children | a3b3ac6bb81c |
| files | tool_dependencies.xml |
| diffstat | 1 files changed, 19 insertions(+), 1 deletions(-) [+] |
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--- a/tool_dependencies.xml Mon Sep 30 07:02:24 2013 -0400 +++ b/tool_dependencies.xml Mon Sep 30 12:04:52 2013 -0400 @@ -2,7 +2,7 @@ <package name="virana_python" version="1.0"> <install version="1.0"> <actions> - <action type="download_by_url">https://github.com/zeidlermicha/virana/raw/master/Virana-1.0.0.tar.gz</action> + <action type="download_by_url">git clone -b master https://github.com/schelhorn/virana.git</action> <action type="make_directory">$INSTALL_DIR/lib/python</action> <action type="shell_command">export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python && python setup.py install --home $INSTALL_DIR --install-scripts $INSTALL_DIR/bin</action> <action type="set_environment"> @@ -77,4 +77,22 @@ </actions> </install> </package> + <package name="jalview" version="2.8" > + <install version="1.0"> + <actions> + <action type="shell_command">git clone -b jalview https://github.com/schelhorn/virana.git</action> + <action type="shell_command">mkdir $GALAXYROOT/tool-data/shared/jalview</action> + <action type="shell_command">mkdir $GALAXYROOT/tool-data/shared/jalview/lib</action> + <action type="move_file"> + <source>jalview/jalview.jar</source> + <destination>$GALAXYROOT/tool-data/shared/jalview</destination> + </action> + <action type="move_directory_files"> + <source_directory>jalview/lib</source_directory> + <destination_directory>$GALAXYROOT/tool-data/shared/jalview/lib</destination_directory> + </action> + </actions> + </install> + </package> + </tool_dependency> \ No newline at end of file