# HG changeset patch
# User mzeidler
# Date 1380557092 14400
# Node ID ad06a67523509fa8d44b2dd1e90a48cac4b61545
# Parent  12ecc13c64b9c2f4f3a7a4775d8247ec0e9c9839
Uploaded

diff -r 12ecc13c64b9 -r ad06a6752350 tool_dependencies.xml
--- a/tool_dependencies.xml	Mon Sep 30 07:02:24 2013 -0400
+++ b/tool_dependencies.xml	Mon Sep 30 12:04:52 2013 -0400
@@ -2,7 +2,7 @@
     <package name="virana_python" version="1.0">
         <install version="1.0">
             <actions>
-                <action type="download_by_url">https://github.com/zeidlermicha/virana/raw/master/Virana-1.0.0.tar.gz</action>
+                <action type="download_by_url">git clone -b master https://github.com/schelhorn/virana.git</action>
                 <action type="make_directory">$INSTALL_DIR/lib/python</action>
                 <action type="shell_command">export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python &amp;&amp; python setup.py install --home $INSTALL_DIR --install-scripts $INSTALL_DIR/bin</action>
                 <action type="set_environment">
@@ -77,4 +77,22 @@
             </actions>
         </install>
     </package>
+    <package name="jalview" version="2.8" >
+        <install version="1.0">
+            <actions>
+                <action type="shell_command">git clone -b jalview https://github.com/schelhorn/virana.git</action>
+                <action type="shell_command">mkdir $GALAXYROOT/tool-data/shared/jalview</action>
+                <action type="shell_command">mkdir $GALAXYROOT/tool-data/shared/jalview/lib</action>
+                <action type="move_file">
+                         <source>jalview/jalview.jar</source>
+                         <destination>$GALAXYROOT/tool-data/shared/jalview</destination>
+                     </action>
+                     <action type="move_directory_files">
+                         <source_directory>jalview/lib</source_directory>
+                         <destination_directory>$GALAXYROOT/tool-data/shared/jalview/lib</destination_directory>
+                     </action>
+            </actions>
+        </install>
+    </package>
+
 </tool_dependency>
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