Mercurial > repos > mvdbeek > deseq2
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planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/deseq2 commit f95b47ed1a09ce14d3b565e8ea56d8bf12c35814-dirty
| author | mvdbeek |
|---|---|
| date | Sat, 05 Mar 2016 07:05:06 -0500 |
| parents | |
| children |
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gene baseMeanA baseMeanB baseMean log2FoldChange lfcSE stat pvalue padj NM_001290814 13.8361846647093 302.692276889662 187.149839999681 4.02298530293272 0.475300264296235 8.46409229098463 2.58155340319795e-17 3.84651457076494e-15 NM_175296 42.3873901225727 938.523758683365 580.069211259048 3.98548352659215 0.502124973720984 7.93723422489391 2.06739417563206e-15 1.54020866084588e-13 NM_010472 166.814206844757 1470.37801982385 948.952494632214 2.93850691094032 0.401906370179809 7.31142158713647 2.643307621836e-13 1.31284278551188e-11 NM_029342 102.585720376899 642.349793886348 426.444164482568 2.47979721531494 0.398185092542637 6.22775001314096 4.73181277129915e-10 1.76260025730893e-08 NM_001033408 10.067353877567 192.663868743505 119.62526279713 3.55941286675189 0.592903302264483 6.0033615146979 1.93273620816604e-09 5.75955390033481e-08 NM_008801 238.766220843347 1165.70420032215 794.929008530628 2.16023652550394 0.376164519001384 5.74279714428886 9.31252640346199e-09 2.31261072352639e-07 NM_199021 342.796872715182 1102.82797928137 798.815536654893 1.6260740249254 0.304536884403641 5.33949780207956 9.32043996944546e-08 1.98392222206768e-06 NM_009255 27214.4775715473 10819.482196131 17377.4803462975 -1.29469303336041 0.268165046272498 -4.82797087598358 1.3793125924685e-06 2.56896970347259e-05 NM_023645 2043.5349277896 759.207151422419 1272.93826196929 -1.38274254401162 0.289726371358106 -4.77258089255026 1.81880019099805e-06 2.89691190975949e-05 NM_172849 25.633576260334 208.094346965569 135.110038683475 2.6194543990624 0.552643837861215 4.73985995971644 2.1386597991513e-06 2.89691190975949e-05 NM_177445 251.161459424046 889.432342079833 634.123989017518 1.72948048577894 0.364622239855406 4.74321173185918 2.10356203684693e-06 2.89691190975949e-05 NM_172841 76.8729625733449 374.319684236064 255.340995570976 2.09413011881783 0.452738357845928 4.62547536016483 3.73740237076367e-06 4.64060794369822e-05 NM_175382 2935.45700718525 1227.02381262979 1910.39709045197 -1.22275330623272 0.273866519954751 -4.46477833958947 8.0151688516042e-06 8.79235349772213e-05 NM_001081011 77.0353110707106 360.087339644055 246.866528214717 2.03634056320338 0.456752830431055 4.45829872861786 8.26127174282616e-06 8.79235349772213e-05 NM_001097644 9785.54102308009 2903.68847368657 5656.42949344398 -1.65478533883576 0.380204768887394 -4.35235292728761 1.3468422003796e-05 0.000133786325237707 NM_001014974 236.628450845237 647.826152044052 483.347071564526 1.38929354885259 0.336202454844838 4.13231232798036 3.59131966815585e-05 0.000334441644097014 NM_174874 168.195766771353 465.666676876747 346.67831283459 1.3928111012325 0.36672550516055 3.79796627622816 0.000145888166183563 0.00127866686831476 NM_173760 10652.175633968 4790.47314922489 7135.15414312214 -1.11426312561516 0.297035656003969 -3.75127734025396 0.000175935955242489 0.00145635874061838 NM_175460 309.419841869487 83.5797478876932 173.915785480411 -1.71657978250327 0.471918742846035 -3.63744777787584 0.000275352997251232 0.00215934718897019 NM_019570 1001.9294894235 444.107250098934 667.236145828762 -1.12514489644241 0.329403206029142 -3.41570718149861 0.00063616614927787 0.00464819358846719 NM_030013 73.361471801667 271.643353996245 192.330601118414 1.69474947951718 0.499191266553957 3.39499024335193 0.0006863104627267 0.00464819358846719 NM_009581 9.18453233819633 79.6145738440232 51.4425572416925 2.35539055140344 0.692796709020918 3.39982930163186 0.000674279329052518 0.00464819358846719 NM_025819 7436.56591598075 4157.76659247737 5469.28632187872 -0.820136402488323 0.243431843899217 -3.3690596486952 0.000754251042909209 0.00488623501710748 NM_001277076 10.6176392691796 95.767407773599 61.7075003718312 2.33678175827228 0.710230094690954 3.29017564271068 0.00100124862426847 0.00621608520900009 NM_026719 949.926448892427 455.046155963654 652.998273135163 -1.02094827570642 0.318111375253008 -3.2094051176083 0.00133009938283553 0.00792739232169974 NM_133239 146.730914425186 396.719385405167 296.723997013175 1.33565408433631 0.418546380184067 3.19117342204447 0.00141696200430467 0.00812028225543832 NM_028250 4.22013924973014 55.3711800561511 34.9107637335827 2.42374020507959 0.763934983366706 3.17270482155174 0.00151025987951588 0.00833439711288392 NM_001081304 3655.36508406539 2100.08154990521 2722.19496356928 -0.781122772793943 0.248818106016245 -3.13933252406859 0.00169333176290756 0.00901094402404382 NM_145519 32.6763531894948 130.345225947406 91.2776768442418 1.72412302967034 0.560413439822975 3.07651977478442 0.00209432410593417 0.0105405303039005 NM_011800 466.439713158195 196.045737912676 304.203328010883 -1.17785775221796 0.38334635231647 -3.07256804479931 0.00212225442360414 0.0105405303039005 NM_133684 4027.59094501628 2113.20936183842 2878.96199510956 -0.898133563093956 0.302972450482269 -2.96440670319798 0.00303267186440641 0.0145763905740824 NM_001037725 8983.50890428911 5085.83304406069 6644.90338815206 -0.796418123400809 0.280083723494551 -2.84350019866935 0.00446209815804139 0.0207766445483802 NM_001003948 3786.72269120433 2018.28935948658 2725.66269217368 -0.872200899069415 0.3198755308669 -2.72668839878327 0.00639734203165843 0.028884968567185 NM_001013025 1275.34017247936 2149.0710928232 1799.57872468567 0.731326876623722 0.275475486889697 2.65478023065098 0.00793600927010312 0.0347716202364891 NM_172513 3647.63477073224 5962.64180181852 5036.63898938401 0.690815020123889 0.26117254162535 2.64505225482263 0.00816783025689341 0.0347716202364891 NR_015470 70.7288171584337 186.47203086882 140.174745384666 1.26326158623545 0.484972310503016 2.60481177765632 0.00919247436426714 0.0370183427101569 NM_133832 6772.25221029071 4323.54681772322 5303.02897475022 -0.633142120084047 0.242959557911166 -2.60595683301146 0.00916180072793548 0.0370183427101569 NM_028096 75.5388325713863 7.08097171407003 34.4641160569965 -2.04459867473767 0.809963914235661 -2.52430835349881 0.0115926194434277 0.0449593280908612 NM_001004173 164.517942091383 51.2139918210098 96.5355719291591 -1.44859342101189 0.577105326809181 -2.51010232225921 0.0120696182794258 0.0449593280908612 NM_028759 121.778220435247 317.827726722269 239.407924207461 1.24309742768331 0.494819506748558 2.51222397405402 0.0119972918454875 0.0449593280908612 NM_018872 3131.69249478152 1830.44306213535 2350.94283519382 -0.747611448692685 0.303153123666712 -2.46611824298606 0.0136586237421861 0.0496374375020909 NM_026456 1687.97108458083 2665.53459133329 2274.50918863231 0.641671769048607 0.263799703348508 2.43242035871772 0.0149982894923404 0.0532082174847315 NM_001039644 269.664974721322 106.514295530262 171.774567206686 -1.20689336578232 0.499805344847487 -2.41472680959544 0.0157470155377294 0.0545652398865508 NM_153179 66.0335886493847 189.535268529269 140.134596577315 1.29200422163446 0.58476801784504 2.20943037616129 0.0271447201486578 0.0919218932306822 NM_013862 57.9773933020706 150.9751957847 113.776074791648 1.20034611313879 0.555406039747788 2.16120464531475 0.030679534747105 0.0993750147243185 NM_031179 23699.3093701959 16327.064312376 19275.962335504 -0.525640098441811 0.243036267009764 -2.16280518504134 0.0305561666441146 0.0993750147243185 NM_028450 159.031029818961 64.3010773045724 102.193058310328 -1.14530381054679 0.542683945675832 -2.11044350892026 0.0348201721775652 0.110387354350153 NM_011086 1088.38700913089 708.41277293586 860.402467413874 -0.600506525695301 0.285809705300589 -2.1010711482444 0.0356347211373772 0.110616113530608 NM_181750 988.145510107309 1633.42677273327 1375.31426768289 0.691681110475252 0.345636673854412 2.00117974392555 0.0453730230669608 0.137971029326064 NM_028320 66.3503148222639 168.766177639581 127.799832512654 1.13334103519654 0.596856523994828 1.89885004123095 0.0575841955463193 0.168505025189728 NM_011273 1169.7213776569 1783.31452717056 1537.8772673651 0.586209055891467 0.308831652616104 1.898150824003 0.0576762166756786 0.168505025189728 NM_009307 19.1370993118597 73.9052049885975 51.9979627179024 1.38855981974957 0.738731163363936 1.87965512843201 0.0601550947186711 0.172367482943884 NM_001081198 15.5068362253521 68.8511509626804 47.5134250677491 1.43443992724129 0.768813082732339 1.86578501258503 0.0620714500148658 0.173308616426112 NM_001033409 37.292400155324 103.925084947312 77.2720110305167 1.19648800202782 0.643088053993534 1.86053526355794 0.062809834141007 0.173308616426112 NM_010629 20.3920477705985 64.224641130997 46.6916037868376 1.27437140633623 0.689002164220358 1.84958984530658 0.0643726875161319 0.174391462543703 NM_001001883 55.7010556033265 125.366817750696 97.5005128917484 1.01549556403718 0.5573634688045 1.82196290369611 0.0684606145716078 0.182154135199457 NM_001081290 2338.77116055352 1598.80435969311 1894.79108003727 -0.530502565676683 0.295670954041591 -1.79423294180618 0.0727759962908026 0.190239007847888 NM_001145781 132.344444368864 247.24683900268 201.285881149154 0.824077316540144 0.463229459585073 1.77898296295381 0.0752425551771667 0.193295529679273 NM_001081433 11747.7968160752 15784.7302797123 14169.9568942575 0.417258081930835 0.236122790171047 1.76712329050734 0.0772075827755409 0.194981861585688 NM_001198955 1974.40117105304 1362.65838683308 1607.35550052106 -0.51676250782857 0.297728504515718 -1.73568368493682 0.0826197798365158 0.205172453260681 NM_025824 2082.07391057534 1452.81340037326 1704.51760445409 -0.501934208544903 0.297954867945368 -1.68459811382218 0.0920661355192479 0.224882855612589 NM_001039493 1428.37333206825 965.397656511462 1150.58792673418 -0.541669340094755 0.324398662086864 -1.66976440842938 0.0949659847901831 0.228224705382859 NM_145381 486.321197977616 315.563281629214 383.866448168575 -0.592746540792354 0.359849089709143 -1.64720867092218 0.0995151621775851 0.229176175818359 NM_001011874 59.0581686994909 12.6701975094081 31.2253859854412 -1.33618921592111 0.809264164608432 -1.65111625394612 0.0987148389847511 0.229176175818359 NM_172406 80.5110648128793 208.576350936415 157.350236487001 1.09041501641853 0.662878724181641 1.64496909712212 0.0999761840818344 0.229176175818359 NM_145506 37.1142416830794 87.7774777152872 67.5121833024041 1.02273641609368 0.624648111918736 1.6373000999749 0.101567780053305 0.229296957999128 NM_021433 2597.21521525258 1847.17305452219 2147.18991881435 -0.475609100727551 0.293468269953283 -1.62064914480623 0.105092906021734 0.233714074585647 NM_001080809 219.613311556608 342.911818482546 293.592415712171 0.606010903117121 0.384841395263523 1.57470300902051 0.11532501295239 0.247479921067462 NM_001081386 149.652529033641 66.7350327575103 99.9020312679628 -0.968124762598471 0.616387766371169 -1.57064240307374 0.11626573472968 0.247479921067462 NM_001039184 208.975876901623 336.120190558832 285.262465095949 0.641255890841377 0.406416299199033 1.57783015126403 0.114604635055094 0.247479921067462 NM_133806 1244.98307482702 869.466097681126 1019.67288853948 -0.497216748760325 0.320593217070861 -1.55092722579475 0.120919125002351 0.253759853878172 NM_009418 421.973939194928 599.352042926026 528.400801433587 0.486947730466508 0.318521955505779 1.52877289006118 0.12632075526195 0.261413785194869 NM_007733 160.60655819268 286.254934268529 235.995583838189 0.748271609265675 0.496996365066975 1.50558769009274 0.132173050490861 0.269777870179977 NM_027188 255.385452415877 448.41494909643 371.203150424209 0.730094504915913 0.494189690801632 1.47735680955144 0.139580017200541 0.281046250849739 NM_021605 653.788520885111 929.012094203369 818.922664876066 0.485057205828745 0.333735031423524 1.45342010923986 0.146107146492884 0.290266197699196 NM_133826 2834.37415610363 2144.38055776303 2420.37799709927 -0.38978059886221 0.288116995818454 -1.35285527934567 0.176101868630787 0.340768550986847 NM_177756 250.432883891363 379.986232569686 328.164893098357 0.560102173761706 0.411877901253072 1.35987430269428 0.173869704153847 0.340768550986847 NM_022563 275.005743477733 438.323837987411 372.99660018354 0.61106858675123 0.474703559689191 1.28726354432927 0.198002445549001 0.364226720824705 NM_199007 91.9324757470352 45.2257933414029 63.9084663036558 -0.835449144365995 0.642506112441185 -1.30029758190428 0.193498996514477 0.364226720824705 NM_033563 3436.93270985466 2674.08713473694 2979.22536478403 -0.351957896780071 0.272956750487103 -1.28942734023609 0.197249561591259 0.364226720824705 NM_013673 117.934061846986 54.0898325837749 79.6275242890593 -0.886016291078523 0.677423149888955 -1.30792148337972 0.190899941946805 0.364226720824705 NM_029122 9036.25672533423 7007.82046449817 7819.19496883259 -0.355622934873889 0.282917040570931 -1.25698662108241 0.208758480221548 0.374759199433863 NM_177644 197.047888427216 288.452041939711 251.890380534713 0.514139880510349 0.408541597560354 1.25847620800571 0.208219586338855 0.374759199433863 NM_153556 332.484266723754 483.730136569625 423.231788631277 0.50574520300591 0.406309690051645 1.24472838179573 0.213231609579802 0.378232259849886 NM_007561 3260.16527769211 2626.28436538333 2879.83673030684 -0.304629160990587 0.24760843090742 -1.2302858988856 0.218590062880102 0.378719992664363 NM_001099276 369.159024508198 517.710878304945 458.290136786246 0.461717085013025 0.373963281634021 1.23465887612165 0.216957487044503 0.378719992664363 NM_080844 2024.56854280344 1613.05009600011 1777.65747472144 -0.319268911435421 0.265797260898008 -1.20117457326971 0.22968349038225 0.393365977781095 NM_177235 59.5213017260315 27.0946382620267 40.0653036476286 -0.839508113417806 0.725524403620845 -1.15710527341066 0.247229352435258 0.418604244464243 NM_001160386 1129.64194518283 856.939906959368 966.020722248755 -0.381445778625183 0.331938380631983 -1.14914635029231 0.250495638739089 0.419369103057576 NM_001109985 92.6807149966973 50.8187236151817 67.5635201677879 -0.709596748543694 0.639398527852741 -1.10978789852191 0.267090435233846 0.442183053887145 NM_145142 99.2642126414181 49.4028240491877 69.3473794860799 -0.770177745752406 0.705841899791697 -1.0911476719924 0.275207908983512 0.4506151476763 NM_011931 13042.0315398214 15935.9742283633 14778.3971529465 0.281594639464433 0.262230244635319 1.07384500920573 0.282892153258975 0.458162291691167 NM_001098528 63.9591902196161 32.8787221635257 45.3109093859619 -0.738893414788655 0.694605369405469 -1.0637600101207 0.287437431427232 0.460518035297394 NM_173444 330.120776659938 456.646214612444 406.036039431441 0.436091639791193 0.412712843329998 1.05664664145792 0.290672885519606 0.460747446195971 NM_001113416 2518.69936732625 2027.97676044802 2224.26580319931 -0.302172953324698 0.295843256905398 -1.02139543921166 0.307067125278712 0.48161054385819 NM_013784 963.07763420699 768.771928905422 846.494211026049 -0.312647755546542 0.309002307644496 -1.01179747792123 0.311634896126226 0.48368332836258 NM_011066 55.851447867914 26.4681500190554 38.2214691585989 -0.759817694968434 0.756833768144791 -1.00394264493636 0.31540625985124 0.484490028018916 NM_001114662 167.079254344423 266.080214039958 226.479830161744 0.573322604529401 0.577352993642521 0.993019194223465 0.320700600662447 0.487595811211271 NM_001287179 1793.64900222305 2173.18502860942 2021.37061805487 0.268717510217155 0.280630426090537 0.957549450216993 0.338289999532556 0.505419429497538 NM_028599 2151.16063239374 1795.95823872269 1938.03919619111 -0.253048585847512 0.266636087775535 -0.949041024261272 0.342599747511754 0.505419429497538 NM_145512 317.527452552363 436.768634813278 389.072161908912 0.422639546487314 0.443576182225175 0.952800360847073 0.340691231446138 0.505419429497538 NM_008922 2503.14641786452 1940.49983412108 2165.55846761846 -0.346593638046007 0.380401650873158 -0.911125483421144 0.362229260721078 0.509171319315477 NM_019790 130.66967572847 76.2150562112951 97.9969040181651 -0.618607886319077 0.667741253966474 -0.926418553061477 0.35422850598823 0.509171319315477 NM_001033373 386.98577461483 288.429634128461 327.852090323009 -0.393196309755094 0.429194673296596 -0.916125791438642 0.359600921724302 0.509171319315477 NM_172516 3294.58016609682 2776.44119299094 2983.69678223329 -0.240697956999522 0.259346347020898 -0.928094649353696 0.353358474885141 0.509171319315477 NM_007842 51.8490578620383 25.934288195458 36.3001960620901 -0.695615455090399 0.757875837748235 -0.917848835446686 0.358698011129996 0.509171319315477 NM_173437 1356.8960123225 1137.32106922691 1225.15104646515 -0.247225995372975 0.28592126200132 -0.864664606061489 0.387222901283828 0.539216937301779 NM_007936 5080.11306013984 4291.53967255423 4606.96902758847 -0.235912406345581 0.285159346881491 -0.827300275882677 0.408066887448938 0.562981168795294 NM_197990 290.781612613677 377.11825406246 342.583597482947 0.346611393681826 0.431896118577313 0.802534171466001 0.422244029921885 0.577195967507898 NM_007734 106.219968874332 148.397291327432 131.526362346192 0.42365054757185 0.544167380312905 0.778529847430848 0.436256717795189 0.590929554104393 NM_001252070 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NA NA NA NA NA NM_001290269 0 0 0 NA NA NA NA NA NM_153171 0 0 0 NA NA NA NA NA NM_001145807 0 0 0 NA NA NA NA NA NM_153539 0 0 0 NA NA NA NA NA NM_008869 35.653368544439 0 14.2613474177756 -1.91885952308802 0.790573257173068 -2.42717484518699 0.0152169203007714 NA NM_001110146 0 0 0 NA NA NA NA NA NM_024458 0 0 0 NA NA NA NA NA NM_001159730 0 0 0 NA NA NA NA NA NR_040603 0 0 0 NA NA NA NA NA NM_021400 0.922412310980623 4.55483922383083 3.10186845869075 0.398948760080105 0.67305191911394 0.592745891885002 0.553351223818174 NA NM_001024720 0 0 0 NA NA NA NA NA NM_022018 12.2289046724075 12.0519046511016 12.122704659624 -0.00571325189775561 0.80461082939856 -0.00710064007220263 0.994334556522362 NA NM_010877 2.70785077552701 6.73793660709848 5.12590227446989 0.236159941499862 0.655339498277251 0.360362746516388 0.71857588174249 NA NR_108050 0 0 0 NA NA NA NA NA NR_046171 0 0 0 NA NA NA NA NA NM_177838 0 0 0 NA NA NA NA NA NM_001277730 0 0 0 NA NA NA NA NA NM_001134741 3.66985385811754 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