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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3 <package name="libpng" version="1.6.7">
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4 <repository changeset_revision="84b368168be8" name="package_libpng_1_6_7" owner="morinlab" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
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5 </package>
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6 <package name="openssl" version="1.0.1">
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7 <repository changeset_revision="33d1f4d7930c" name="package_openssl_1_0" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
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8 </package>
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9 <package name="mysql" version="6.1.0">
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10 <repository changeset_revision="766f27cb3cd7" name="package_mysql_6_1_0" owner="morinlab" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
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11 </package>
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12 <package name="ucsc_user_apps" version="310">
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13 <install version="1.0">
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14 <actions>
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15 <action type="download_by_url">http://hgdownload.soe.ucsc.edu/admin/exe/userApps.v310.src.tgz</action>
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16 <action type="set_environment_for_install">
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17 <repository changeset_revision="33d1f4d7930c" name="package_openssl_1_0" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
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18 <package name="openssl" version="1.0.1" />
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19 </repository>
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20 <repository changeset_revision="84b368168be8" name="package_libpng_1_6_7" owner="morinlab" toolshed="https://testtoolshed.g2.bx.psu.edu">
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21 <package name="libpng" version="1.6.7" />
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22 </repository>
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23 <repository changeset_revision="766f27cb3cd7" name="package_mysql_6_1_0" owner="morinlab" toolshed="https://testtoolshed.g2.bx.psu.edu">
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24 <package name="mysql" version="6.1.0" />
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25 </repository>
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26 </action>
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27 <action type="shell_command">echo $PATH > ~/tmp.env.txt</action>
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28 <action type="shell_command">make</action>
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29 <action type="move_directory_files">
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30 <source_directory>./bin</source_directory>
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31 <destination_directory>$INSTALL_DIR/bin</destination_directory>
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32 </action>
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33 <action type="set_environment">
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34 <environment_variable action="set_to" name="UCSCUSERAPPS">$INSTALL_DIR</environment_variable>
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35 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
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36 </action>
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37 </actions>
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38 </install>
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39 <readme>
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40 UCSC User Apps may take a moment for installation as it builds all utililities.
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41 Post installation, all tools will be available as command line executables.
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42 </readme>
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43 </package>
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44 </tool_dependency>
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