comparison tool_dependencies.xml @ 0:7d0e49dc20c2 draft default tip

Uploaded
author morinlab
date Sun, 04 Dec 2016 19:08:54 -0500
parents
children
comparison
equal deleted inserted replaced
-1:000000000000 0:7d0e49dc20c2
1 <?xml version="1.0"?>
2 <tool_dependency>
3 <package name="libpng" version="1.6.7">
4 <repository changeset_revision="84b368168be8" name="package_libpng_1_6_7" owner="morinlab" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
5 </package>
6 <package name="openssl" version="1.0.1">
7 <repository changeset_revision="33d1f4d7930c" name="package_openssl_1_0" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
8 </package>
9 <package name="mysql" version="6.1.0">
10 <repository changeset_revision="766f27cb3cd7" name="package_mysql_6_1_0" owner="morinlab" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
11 </package>
12 <package name="ucsc_user_apps" version="310">
13 <install version="1.0">
14 <actions>
15 <action type="download_by_url">http://hgdownload.soe.ucsc.edu/admin/exe/userApps.v310.src.tgz</action>
16 <action type="set_environment_for_install">
17 <repository changeset_revision="33d1f4d7930c" name="package_openssl_1_0" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
18 <package name="openssl" version="1.0.1" />
19 </repository>
20 <repository changeset_revision="84b368168be8" name="package_libpng_1_6_7" owner="morinlab" toolshed="https://testtoolshed.g2.bx.psu.edu">
21 <package name="libpng" version="1.6.7" />
22 </repository>
23 <repository changeset_revision="766f27cb3cd7" name="package_mysql_6_1_0" owner="morinlab" toolshed="https://testtoolshed.g2.bx.psu.edu">
24 <package name="mysql" version="6.1.0" />
25 </repository>
26 </action>
27 <action type="shell_command">echo $PATH &gt; ~/tmp.env.txt</action>
28 <action type="shell_command">make</action>
29 <action type="move_directory_files">
30 <source_directory>./bin</source_directory>
31 <destination_directory>$INSTALL_DIR/bin</destination_directory>
32 </action>
33 <action type="set_environment">
34 <environment_variable action="set_to" name="UCSCUSERAPPS">$INSTALL_DIR</environment_variable>
35 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
36 </action>
37 </actions>
38 </install>
39 <readme>
40 UCSC User Apps may take a moment for installation as it builds all utililities.
41 Post installation, all tools will be available as command line executables.
42 </readme>
43 </package>
44 </tool_dependency>