Mercurial > repos > morinlab > package_mutationseq_python_environment_4_3_6
changeset 0:6b0b2391addb draft
planemo upload for repository https://github.com/morinlab/tools-morinlab/tree/master/packages/package_mutationseq_python_environment_4_3_6 commit 4ef2d91b7c1686a2696b92fe538d4aec51d05e40-dirty
| author | morinlab |
|---|---|
| date | Tue, 11 Oct 2016 13:53:06 -0400 |
| parents | |
| children | 2ed80b397b53 |
| files | tool_dependencies.xml |
| diffstat | 1 files changed, 34 insertions(+), 0 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool_dependencies.xml Tue Oct 11 13:53:06 2016 -0400 @@ -0,0 +1,34 @@ +<?xml version="1.0"?> +<tool_dependency> + <package name="mutationseq_python_environment" version = "4.3.6"> + <install version="1.0"> + <actions_group> + <actions os="linux" architecture="x86_64"> + <action type="download_by_url" md5sum="874dbb0d3c7ec665adf7231bbb575ab2" target_filename="Miniconda3-4.1.11-Linux-x86_64.sh"> + https://repo.continuum.io/miniconda/Miniconda3-4.1.11-Linux-x86_64.sh + </action> + <action type="shell_command"> + bash Miniconda3-4.1.11-Linux-x86_64.sh -b -f -p $INSTALL_DIR + </action> + </actions> + <actions os="darwin" architecture="x86_64"> + <action type="download_by_url" md5sum="870d6f99eda1263c6e857d637e861d20" target_filename="Miniconda3-4.1.11-MacOSX-x86_64.sh"> + https://repo.continuum.io/miniconda/Miniconda3-4.1.11-MacOSX-x86_64.sh + </action> + <action type="shell_command"> + bash Miniconda3-4.1.11-MacOSX-x86_64.sh -b -f -p $INSTALL_DIR + </action> + </actions> + <action type="shell_command"> + $INSTALL_DIR/bin/python $INSTALL_DIR/bin/conda install --quiet python=2.7 numpy=1.7.1 scipy=0.12.0 scikit-learn=0.14.1 matplotlib=1.2.1 + </action> + <action type="shell_command"> + $INSTALL_DIR/bin/pip install --quiet --ignore-installed --prefix $INSTALL_DIR intervaltree==2.0.4 + </action> + <action type="set_environment"> + <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> + </action> + </actions_group> + </install> + </package> +</tool_dependency>