# HG changeset patch
# User morinlab
# Date 1476208386 14400
# Node ID 6b0b2391addb1030eb1a61a26d1db78854e7d5f0

planemo upload for repository https://github.com/morinlab/tools-morinlab/tree/master/packages/package_mutationseq_python_environment_4_3_6 commit 4ef2d91b7c1686a2696b92fe538d4aec51d05e40-dirty

diff -r 000000000000 -r 6b0b2391addb tool_dependencies.xml
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Tue Oct 11 13:53:06 2016 -0400
@@ -0,0 +1,34 @@
+<?xml version="1.0"?>
+<tool_dependency>
+  <package name="mutationseq_python_environment" version = "4.3.6">
+    <install version="1.0">
+      <actions_group>
+        <actions os="linux" architecture="x86_64">
+          <action type="download_by_url" md5sum="874dbb0d3c7ec665adf7231bbb575ab2" target_filename="Miniconda3-4.1.11-Linux-x86_64.sh">
+            https://repo.continuum.io/miniconda/Miniconda3-4.1.11-Linux-x86_64.sh
+          </action>
+          <action type="shell_command">
+            bash Miniconda3-4.1.11-Linux-x86_64.sh -b -f -p $INSTALL_DIR
+          </action>
+        </actions>
+        <actions os="darwin" architecture="x86_64">
+          <action type="download_by_url" md5sum="870d6f99eda1263c6e857d637e861d20" target_filename="Miniconda3-4.1.11-MacOSX-x86_64.sh">
+            https://repo.continuum.io/miniconda/Miniconda3-4.1.11-MacOSX-x86_64.sh
+          </action>
+          <action type="shell_command">
+            bash Miniconda3-4.1.11-MacOSX-x86_64.sh -b -f -p $INSTALL_DIR
+          </action>
+        </actions>
+        <action type="shell_command">
+          $INSTALL_DIR/bin/python $INSTALL_DIR/bin/conda install --quiet python=2.7 numpy=1.7.1 scipy=0.12.0 scikit-learn=0.14.1 matplotlib=1.2.1
+        </action>
+        <action type="shell_command">
+          $INSTALL_DIR/bin/pip install --quiet --ignore-installed --prefix $INSTALL_DIR intervaltree==2.0.4
+        </action>
+        <action type="set_environment">
+          <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
+        </action>
+      </actions_group>
+    </install>
+  </package>
+</tool_dependency>