Mercurial > repos > morinlab > package_mutationseq_python_environment_4_3_6

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author morinlab
date Tue, 06 Dec 2016 20:47:44 -0500
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6b0b2391addb planemo upload for repository https://github.com/morinlab/tools-morinlab/tree/master/packages/package_mutationseq_python_environment_4_3_6 commit 4ef2d91b7c1686a2696b92fe538d4aec51d05e40-dirty
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1 <?xml version="1.0"?>
6b0b2391addb planemo upload for repository https://github.com/morinlab/tools-morinlab/tree/master/packages/package_mutationseq_python_environment_4_3_6 commit 4ef2d91b7c1686a2696b92fe538d4aec51d05e40-dirty
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2 <tool_dependency>
6b0b2391addb planemo upload for repository https://github.com/morinlab/tools-morinlab/tree/master/packages/package_mutationseq_python_environment_4_3_6 commit 4ef2d91b7c1686a2696b92fe538d4aec51d05e40-dirty
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3 <package name="mutationseq_python_environment" version = "4.3.6">
6b0b2391addb planemo upload for repository https://github.com/morinlab/tools-morinlab/tree/master/packages/package_mutationseq_python_environment_4_3_6 commit 4ef2d91b7c1686a2696b92fe538d4aec51d05e40-dirty
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4 <install version="1.0">
6b0b2391addb planemo upload for repository https://github.com/morinlab/tools-morinlab/tree/master/packages/package_mutationseq_python_environment_4_3_6 commit 4ef2d91b7c1686a2696b92fe538d4aec51d05e40-dirty
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5 <actions_group>
6b0b2391addb planemo upload for repository https://github.com/morinlab/tools-morinlab/tree/master/packages/package_mutationseq_python_environment_4_3_6 commit 4ef2d91b7c1686a2696b92fe538d4aec51d05e40-dirty
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6 <actions os="linux" architecture="x86_64">
6b0b2391addb planemo upload for repository https://github.com/morinlab/tools-morinlab/tree/master/packages/package_mutationseq_python_environment_4_3_6 commit 4ef2d91b7c1686a2696b92fe538d4aec51d05e40-dirty
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7 <action type="download_by_url" md5sum="874dbb0d3c7ec665adf7231bbb575ab2" target_filename="Miniconda3-4.1.11-Linux-x86_64.sh">
6b0b2391addb planemo upload for repository https://github.com/morinlab/tools-morinlab/tree/master/packages/package_mutationseq_python_environment_4_3_6 commit 4ef2d91b7c1686a2696b92fe538d4aec51d05e40-dirty
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8 https://repo.continuum.io/miniconda/Miniconda3-4.1.11-Linux-x86_64.sh
6b0b2391addb planemo upload for repository https://github.com/morinlab/tools-morinlab/tree/master/packages/package_mutationseq_python_environment_4_3_6 commit 4ef2d91b7c1686a2696b92fe538d4aec51d05e40-dirty
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9 </action>
6b0b2391addb planemo upload for repository https://github.com/morinlab/tools-morinlab/tree/master/packages/package_mutationseq_python_environment_4_3_6 commit 4ef2d91b7c1686a2696b92fe538d4aec51d05e40-dirty
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10 <action type="shell_command">
6b0b2391addb planemo upload for repository https://github.com/morinlab/tools-morinlab/tree/master/packages/package_mutationseq_python_environment_4_3_6 commit 4ef2d91b7c1686a2696b92fe538d4aec51d05e40-dirty
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11 bash Miniconda3-4.1.11-Linux-x86_64.sh -b -f -p $INSTALL_DIR
6b0b2391addb planemo upload for repository https://github.com/morinlab/tools-morinlab/tree/master/packages/package_mutationseq_python_environment_4_3_6 commit 4ef2d91b7c1686a2696b92fe538d4aec51d05e40-dirty
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12 </action>
6b0b2391addb planemo upload for repository https://github.com/morinlab/tools-morinlab/tree/master/packages/package_mutationseq_python_environment_4_3_6 commit 4ef2d91b7c1686a2696b92fe538d4aec51d05e40-dirty
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13 </actions>
6b0b2391addb planemo upload for repository https://github.com/morinlab/tools-morinlab/tree/master/packages/package_mutationseq_python_environment_4_3_6 commit 4ef2d91b7c1686a2696b92fe538d4aec51d05e40-dirty
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14 <actions os="darwin" architecture="x86_64">
6b0b2391addb planemo upload for repository https://github.com/morinlab/tools-morinlab/tree/master/packages/package_mutationseq_python_environment_4_3_6 commit 4ef2d91b7c1686a2696b92fe538d4aec51d05e40-dirty
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15 <action type="download_by_url" md5sum="870d6f99eda1263c6e857d637e861d20" target_filename="Miniconda3-4.1.11-MacOSX-x86_64.sh">
6b0b2391addb planemo upload for repository https://github.com/morinlab/tools-morinlab/tree/master/packages/package_mutationseq_python_environment_4_3_6 commit 4ef2d91b7c1686a2696b92fe538d4aec51d05e40-dirty
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16 https://repo.continuum.io/miniconda/Miniconda3-4.1.11-MacOSX-x86_64.sh
6b0b2391addb planemo upload for repository https://github.com/morinlab/tools-morinlab/tree/master/packages/package_mutationseq_python_environment_4_3_6 commit 4ef2d91b7c1686a2696b92fe538d4aec51d05e40-dirty
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17 </action>
6b0b2391addb planemo upload for repository https://github.com/morinlab/tools-morinlab/tree/master/packages/package_mutationseq_python_environment_4_3_6 commit 4ef2d91b7c1686a2696b92fe538d4aec51d05e40-dirty
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18 <action type="shell_command">
6b0b2391addb planemo upload for repository https://github.com/morinlab/tools-morinlab/tree/master/packages/package_mutationseq_python_environment_4_3_6 commit 4ef2d91b7c1686a2696b92fe538d4aec51d05e40-dirty
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19 bash Miniconda3-4.1.11-MacOSX-x86_64.sh -b -f -p $INSTALL_DIR
6b0b2391addb planemo upload for repository https://github.com/morinlab/tools-morinlab/tree/master/packages/package_mutationseq_python_environment_4_3_6 commit 4ef2d91b7c1686a2696b92fe538d4aec51d05e40-dirty
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20 </action>
6b0b2391addb planemo upload for repository https://github.com/morinlab/tools-morinlab/tree/master/packages/package_mutationseq_python_environment_4_3_6 commit 4ef2d91b7c1686a2696b92fe538d4aec51d05e40-dirty
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21 </actions>
6b0b2391addb planemo upload for repository https://github.com/morinlab/tools-morinlab/tree/master/packages/package_mutationseq_python_environment_4_3_6 commit 4ef2d91b7c1686a2696b92fe538d4aec51d05e40-dirty
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22 <action type="shell_command">
6b0b2391addb planemo upload for repository https://github.com/morinlab/tools-morinlab/tree/master/packages/package_mutationseq_python_environment_4_3_6 commit 4ef2d91b7c1686a2696b92fe538d4aec51d05e40-dirty
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23 $INSTALL_DIR/bin/python $INSTALL_DIR/bin/conda install --quiet python=2.7 numpy=1.7.1 scipy=0.12.0 scikit-learn=0.14.1 matplotlib=1.2.1
6b0b2391addb planemo upload for repository https://github.com/morinlab/tools-morinlab/tree/master/packages/package_mutationseq_python_environment_4_3_6 commit 4ef2d91b7c1686a2696b92fe538d4aec51d05e40-dirty
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24 </action>
6b0b2391addb planemo upload for repository https://github.com/morinlab/tools-morinlab/tree/master/packages/package_mutationseq_python_environment_4_3_6 commit 4ef2d91b7c1686a2696b92fe538d4aec51d05e40-dirty
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25 <action type="shell_command">
6b0b2391addb planemo upload for repository https://github.com/morinlab/tools-morinlab/tree/master/packages/package_mutationseq_python_environment_4_3_6 commit 4ef2d91b7c1686a2696b92fe538d4aec51d05e40-dirty
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26 $INSTALL_DIR/bin/pip install --quiet --ignore-installed --prefix $INSTALL_DIR intervaltree==2.0.4
6b0b2391addb planemo upload for repository https://github.com/morinlab/tools-morinlab/tree/master/packages/package_mutationseq_python_environment_4_3_6 commit 4ef2d91b7c1686a2696b92fe538d4aec51d05e40-dirty
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27 </action>
6b0b2391addb planemo upload for repository https://github.com/morinlab/tools-morinlab/tree/master/packages/package_mutationseq_python_environment_4_3_6 commit 4ef2d91b7c1686a2696b92fe538d4aec51d05e40-dirty
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28 <action type="set_environment">
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29 <environment_variable action="set_to" name="MUTATIONSEQ_PYTHON_ENVIRONMENT_ROOT_DIR">$INSTALL_DIR</environment_variable>
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6b0b2391addb planemo upload for repository https://github.com/morinlab/tools-morinlab/tree/master/packages/package_mutationseq_python_environment_4_3_6 commit 4ef2d91b7c1686a2696b92fe538d4aec51d05e40-dirty
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30 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
6b0b2391addb planemo upload for repository https://github.com/morinlab/tools-morinlab/tree/master/packages/package_mutationseq_python_environment_4_3_6 commit 4ef2d91b7c1686a2696b92fe538d4aec51d05e40-dirty
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31 </action>
6b0b2391addb planemo upload for repository https://github.com/morinlab/tools-morinlab/tree/master/packages/package_mutationseq_python_environment_4_3_6 commit 4ef2d91b7c1686a2696b92fe538d4aec51d05e40-dirty
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32 </actions_group>
6b0b2391addb planemo upload for repository https://github.com/morinlab/tools-morinlab/tree/master/packages/package_mutationseq_python_environment_4_3_6 commit 4ef2d91b7c1686a2696b92fe538d4aec51d05e40-dirty
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33 </install>
6b0b2391addb planemo upload for repository https://github.com/morinlab/tools-morinlab/tree/master/packages/package_mutationseq_python_environment_4_3_6 commit 4ef2d91b7c1686a2696b92fe538d4aec51d05e40-dirty
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34 </package>
6b0b2391addb planemo upload for repository https://github.com/morinlab/tools-morinlab/tree/master/packages/package_mutationseq_python_environment_4_3_6 commit 4ef2d91b7c1686a2696b92fe538d4aec51d05e40-dirty
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35 </tool_dependency>