Mercurial > repos > morinlab > package_mutationseq_4_3_6
changeset 0:8c5162fa4218 draft
planemo upload for repository https://github.com/morinlab/tools-morinlab/tree/master/packages/package_mutationseq_4_3_6 commit 4ef2d91b7c1686a2696b92fe538d4aec51d05e40-dirty
| author | morinlab |
|---|---|
| date | Tue, 11 Oct 2016 13:54:23 -0400 |
| parents | |
| children | 2ed3cb295bc3 |
| files | tool_dependencies.xml |
| diffstat | 1 files changed, 35 insertions(+), 0 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool_dependencies.xml Tue Oct 11 13:54:23 2016 -0400 @@ -0,0 +1,35 @@ +<?xml version="1.0"?> +<tool_dependency> + <package name="boost" version="1.51.0"> + <repository changeset_revision="16e8d772bce0" name="package_boost_1_51_0" owner="morinlab" toolshed="https://testtoolshed.g2.bx.psu.edu" /> + </package> + <package name="mutationseq_python_environment" version="4.3.6"> + <repository changeset_revision="6b0b2391addb" name="package_mutationseq_python_environment_4_3_6" owner="morinlab" toolshed="https://testtoolshed.g2.bx.psu.edu" /> + </package> + <package name="mutationseq" version="4.3.6"> + <install version="1.0"> + <actions> + <action type="download_by_url">ftp://ftp.bcgsc.ca/public/shahlab/MutationSeq/museq_4.3.6.tar.gz</action> + <action type="set_environment_for_install"> + <repository changeset_revision="16e8d772bce0" name="package_boost_1_51_0" owner="morinlab" toolshed="https://testtoolshed.g2.bx.psu.edu"> + <package name="boost" version="1.51.0" /> + </repository> + <repository changeset_revision="6b0b2391addb" name="package_mutationseq_python_environment_4_3_6" owner="morinlab" toolshed="https://testtoolshed.g2.bx.psu.edu"> + <package name="mutationseq_python_environment" version="4.3.6" /> + </repository> + </action> + <action type="shell_command">make clean</action> + <action type="shell_command"> + make PYTHON=\${MUTATIONSEQ_PYTHON_ENVIRONMENT_ROOT_DIR}/bin/python2.7 BOOSTPATH=\${BOOST_ROOT_DIR}/ + </action> + <action type="move_directory_files"> + <source_directory>.</source_directory> + <destination_directory>$INSTALL_DIR</destination_directory> + </action> + <action type="set_environment"> + <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR</environment_variable> + </action> + </actions> + </install> + </package> +</tool_dependency>