# HG changeset patch
# User morinlab
# Date 1476208463 14400
# Node ID 8c5162fa421843df83d506a6e3ebe1343b1553d5

planemo upload for repository https://github.com/morinlab/tools-morinlab/tree/master/packages/package_mutationseq_4_3_6 commit 4ef2d91b7c1686a2696b92fe538d4aec51d05e40-dirty

diff -r 000000000000 -r 8c5162fa4218 tool_dependencies.xml
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Tue Oct 11 13:54:23 2016 -0400
@@ -0,0 +1,35 @@
+<?xml version="1.0"?>
+<tool_dependency>
+  <package name="boost" version="1.51.0">
+    <repository changeset_revision="16e8d772bce0" name="package_boost_1_51_0" owner="morinlab" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  </package>
+  <package name="mutationseq_python_environment" version="4.3.6">
+    <repository changeset_revision="6b0b2391addb" name="package_mutationseq_python_environment_4_3_6" owner="morinlab" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  </package>
+  <package name="mutationseq" version="4.3.6">
+    <install version="1.0">
+      <actions>
+        <action type="download_by_url">ftp://ftp.bcgsc.ca/public/shahlab/MutationSeq/museq_4.3.6.tar.gz</action>
+        <action type="set_environment_for_install">
+          <repository changeset_revision="16e8d772bce0" name="package_boost_1_51_0" owner="morinlab" toolshed="https://testtoolshed.g2.bx.psu.edu">
+            <package name="boost" version="1.51.0" />
+          </repository>
+          <repository changeset_revision="6b0b2391addb" name="package_mutationseq_python_environment_4_3_6" owner="morinlab" toolshed="https://testtoolshed.g2.bx.psu.edu">
+            <package name="mutationseq_python_environment" version="4.3.6" />
+          </repository>
+        </action>
+        <action type="shell_command">make clean</action>
+        <action type="shell_command">
+          make PYTHON=\${MUTATIONSEQ_PYTHON_ENVIRONMENT_ROOT_DIR}/bin/python2.7 BOOSTPATH=\${BOOST_ROOT_DIR}/
+        </action>
+        <action type="move_directory_files">
+          <source_directory>.</source_directory>
+          <destination_directory>$INSTALL_DIR</destination_directory>
+        </action>
+        <action type="set_environment">
+          <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR</environment_variable>
+        </action>
+      </actions>
+    </install>
+  </package>
+</tool_dependency>