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author morinlab
date Fri, 09 Dec 2016 17:43:35 -0500
parents 2ed3cb295bc3
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<?xml version="1.0"?>
<tool_dependency>
  <package name="boost" version="1.51.0">
    <repository changeset_revision="16e8d772bce0" name="package_boost_1_51_0" owner="morinlab" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
  </package>
  <package name="mutationseq_python_environment" version="4.3.6">
    <repository changeset_revision="2ed80b397b53" name="package_mutationseq_python_environment_4_3_6" owner="morinlab" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
  </package>
  <package name="mutationseq" version="4.3.6">
    <install version="1.0">
      <actions>
        <action type="download_by_url">ftp://ftp.bcgsc.ca/public/shahlab/MutationSeq/museq_4.3.6.tar.gz</action>
        <action type="set_environment_for_install">
          <repository changeset_revision="16e8d772bce0" name="package_boost_1_51_0" owner="morinlab" toolshed="https://testtoolshed.g2.bx.psu.edu">
            <package name="boost" version="1.51.0" />
          </repository>
          <repository changeset_revision="2ed80b397b53" name="package_mutationseq_python_environment_4_3_6" owner="morinlab" toolshed="https://testtoolshed.g2.bx.psu.edu">
            <package name="mutationseq_python_environment" version="4.3.6" />
          </repository>
        </action>
	<action type="change_directory">./museq</action>
        <action type="shell_command">make clean</action>
        <action type="shell_command">
          make PYTHON=\${MUTATIONSEQ_PYTHON_ENVIRONMENT_ROOT_DIR}/bin/python2.7 BOOSTPATH=\${BOOST_ROOT_DIR}/
        </action>
        <action type="move_directory_files">
          <source_directory>.</source_directory>
          <destination_directory>$INSTALL_DIR</destination_directory>
        </action>
        <action type="set_environment">
          <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR</environment_variable>
        </action>
      </actions>
    </install>
  </package>
</tool_dependency>