Mercurial > repos > morinlab > package_mutationseq_4_3_6

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author morinlab
date Fri, 09 Dec 2016 17:43:35 -0500
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1 <?xml version="1.0"?>
8c5162fa4218 planemo upload for repository https://github.com/morinlab/tools-morinlab/tree/master/packages/package_mutationseq_4_3_6 commit 4ef2d91b7c1686a2696b92fe538d4aec51d05e40-dirty
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2 <tool_dependency>
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3 <package name="boost" version="1.51.0">
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4 <repository changeset_revision="16e8d772bce0" name="package_boost_1_51_0" owner="morinlab" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
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5 </package>
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6 <package name="mutationseq_python_environment" version="4.3.6">
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7 <repository changeset_revision="2ed80b397b53" name="package_mutationseq_python_environment_4_3_6" owner="morinlab" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
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8 </package>
8c5162fa4218 planemo upload for repository https://github.com/morinlab/tools-morinlab/tree/master/packages/package_mutationseq_4_3_6 commit 4ef2d91b7c1686a2696b92fe538d4aec51d05e40-dirty
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9 <package name="mutationseq" version="4.3.6">
8c5162fa4218 planemo upload for repository https://github.com/morinlab/tools-morinlab/tree/master/packages/package_mutationseq_4_3_6 commit 4ef2d91b7c1686a2696b92fe538d4aec51d05e40-dirty
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10 <install version="1.0">
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11 <actions>
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12 <action type="download_by_url">ftp://ftp.bcgsc.ca/public/shahlab/MutationSeq/museq_4.3.6.tar.gz</action>
8c5162fa4218 planemo upload for repository https://github.com/morinlab/tools-morinlab/tree/master/packages/package_mutationseq_4_3_6 commit 4ef2d91b7c1686a2696b92fe538d4aec51d05e40-dirty
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13 <action type="set_environment_for_install">
8c5162fa4218 planemo upload for repository https://github.com/morinlab/tools-morinlab/tree/master/packages/package_mutationseq_4_3_6 commit 4ef2d91b7c1686a2696b92fe538d4aec51d05e40-dirty
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14 <repository changeset_revision="16e8d772bce0" name="package_boost_1_51_0" owner="morinlab" toolshed="https://testtoolshed.g2.bx.psu.edu">
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15 <package name="boost" version="1.51.0" />
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16 </repository>
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17 <repository changeset_revision="2ed80b397b53" name="package_mutationseq_python_environment_4_3_6" owner="morinlab" toolshed="https://testtoolshed.g2.bx.psu.edu">
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18 <package name="mutationseq_python_environment" version="4.3.6" />
8c5162fa4218 planemo upload for repository https://github.com/morinlab/tools-morinlab/tree/master/packages/package_mutationseq_4_3_6 commit 4ef2d91b7c1686a2696b92fe538d4aec51d05e40-dirty
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19 </repository>
8c5162fa4218 planemo upload for repository https://github.com/morinlab/tools-morinlab/tree/master/packages/package_mutationseq_4_3_6 commit 4ef2d91b7c1686a2696b92fe538d4aec51d05e40-dirty
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20 </action>
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21 <action type="change_directory">./museq</action>
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8c5162fa4218 planemo upload for repository https://github.com/morinlab/tools-morinlab/tree/master/packages/package_mutationseq_4_3_6 commit 4ef2d91b7c1686a2696b92fe538d4aec51d05e40-dirty
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22 <action type="shell_command">make clean</action>
8c5162fa4218 planemo upload for repository https://github.com/morinlab/tools-morinlab/tree/master/packages/package_mutationseq_4_3_6 commit 4ef2d91b7c1686a2696b92fe538d4aec51d05e40-dirty
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23 <action type="shell_command">
8c5162fa4218 planemo upload for repository https://github.com/morinlab/tools-morinlab/tree/master/packages/package_mutationseq_4_3_6 commit 4ef2d91b7c1686a2696b92fe538d4aec51d05e40-dirty
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24 make PYTHON=\${MUTATIONSEQ_PYTHON_ENVIRONMENT_ROOT_DIR}/bin/python2.7 BOOSTPATH=\${BOOST_ROOT_DIR}/
8c5162fa4218 planemo upload for repository https://github.com/morinlab/tools-morinlab/tree/master/packages/package_mutationseq_4_3_6 commit 4ef2d91b7c1686a2696b92fe538d4aec51d05e40-dirty
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25 </action>
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26 <action type="move_directory_files">
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27 <source_directory>.</source_directory>
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28 <destination_directory>$INSTALL_DIR</destination_directory>
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29 </action>
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30 <action type="set_environment">
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31 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR</environment_variable>
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32 </action>
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33 </actions>
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34 </install>
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35 </package>
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36 </tool_dependency>