Mercurial > repos > morinlab > mutationseq

changeset 2:7de2cc3a24af draft default tip

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Uploaded
author morinlab
date Tue, 06 Dec 2016 20:03:54 -0500
parents 2864eb962e5a
children
files mutationseq.xml
diffstat 1 files changed, 2 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/mutationseq.xml	Tue Dec 06 19:51:11 2016 -0500
+++ b/mutationseq.xml	Tue Dec 06 20:03:54 2016 -0500
@@ -99,8 +99,8 @@
   --threshold $advancedsettings.filter_prob
 
   | grep -v ".*no somatic mutation calls.*" >> ./output_noheader;
-  echo "##fileformat=VCFv4.2
-  #CHROM\tPOS\tID\tREF\tALT\tQUAL\tFILTER\tINFO" > ./minimal_vcf_header;
+  echo "\##fileformat=VCFv4.2" > ./minimal_vcf_header;
+  echo "#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO" >> ./minimal_vcf_header;
   cat ./minimal_vcf_header ./output_noheader > $output
   #if $interval
     ; done