Mercurial > repos > mmonsoor > probmetab
changeset 8:66fe5a2237f3 draft
planemo upload commit c897279aa8cae0a4ad889bb05b143f32d2b6d712
| author | lecorguille |
|---|---|
| date | Fri, 07 Apr 2017 06:55:52 -0400 |
| parents | cbf292c32002 |
| children | fe21deb6b625 |
| files | lib.r |
| diffstat | 1 files changed, 2 insertions(+), 2 deletions(-) [+] |
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--- a/lib.r Fri Apr 07 04:03:36 2017 -0400 +++ b/lib.r Fri Apr 07 06:55:52 2017 -0400 @@ -50,8 +50,8 @@ #} # include CAMERA non-annotated compounds, and snr retrieval # comb 2+ - used on Table 1 - ionAnnotP2plus = get.annot(axP, allowMiss=listArguments[["allowMiss"]], xset=xsetPnofill,toexclude=listArguments[["toexclude"]]) - ionAnnotN2plus = get.annot(axN, polarity="negative", allowMiss=listArguments[["allowMiss"]], xset=xsetNnofill,toexclude=listArguments[["toexclude"]]) + ionAnnotP2plus = get.annot(xaP, allowMiss=listArguments[["allowMiss"]], xset=xsetPnofill,toexclude=listArguments[["toexclude"]]) + ionAnnotN2plus = get.annot(xaN, polarity="negative", allowMiss=listArguments[["allowMiss"]], xset=xsetNnofill,toexclude=listArguments[["toexclude"]]) ionAnnot = combineMolIon(ionAnnotP2plus, ionAnnotN2plus) print(sum(ionAnnot$molIon[,3]==1)) print(sum(ionAnnot$molIon[,3]==0))