# HG changeset patch # User lecorguille # Date 1491562552 14400 # Node ID 66fe5a2237f34b1bc7f832f168b340ff9120269e # Parent cbf292c32002382f6adda744cabc1450a50a2e21 planemo upload commit c897279aa8cae0a4ad889bb05b143f32d2b6d712 diff -r cbf292c32002 -r 66fe5a2237f3 lib.r --- a/lib.r Fri Apr 07 04:03:36 2017 -0400 +++ b/lib.r Fri Apr 07 06:55:52 2017 -0400 @@ -50,8 +50,8 @@ #} # include CAMERA non-annotated compounds, and snr retrieval # comb 2+ - used on Table 1 - ionAnnotP2plus = get.annot(axP, allowMiss=listArguments[["allowMiss"]], xset=xsetPnofill,toexclude=listArguments[["toexclude"]]) - ionAnnotN2plus = get.annot(axN, polarity="negative", allowMiss=listArguments[["allowMiss"]], xset=xsetNnofill,toexclude=listArguments[["toexclude"]]) + ionAnnotP2plus = get.annot(xaP, allowMiss=listArguments[["allowMiss"]], xset=xsetPnofill,toexclude=listArguments[["toexclude"]]) + ionAnnotN2plus = get.annot(xaN, polarity="negative", allowMiss=listArguments[["allowMiss"]], xset=xsetNnofill,toexclude=listArguments[["toexclude"]]) ionAnnot = combineMolIon(ionAnnotP2plus, ionAnnotN2plus) print(sum(ionAnnot$molIon[,3]==1)) print(sum(ionAnnot$molIon[,3]==0))