Mercurial > repos > mingchen0919 > test_galaxy_tool_generator_2

changeset 4:f0b7e87a8df2 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload
author mingchen0919
date Wed, 04 Oct 2017 14:05:03 -0400
parents f7d987ad7103
children
files DESeq2.R deseq2.xml
diffstat 2 files changed, 25 insertions(+), 6 deletions(-) [+]
line wrap: on
line diff
--- a/DESeq2.R	Tue Oct 03 23:59:18 2017 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,3 +0,0 @@
-library(DESeq2)
-
-x = 1:100
\ No newline at end of file
--- a/deseq2.xml	Tue Oct 03 23:59:18 2017 -0400
+++ b/deseq2.xml	Wed Oct 04 14:05:03 2017 -0400
@@ -1,6 +1,28 @@
-<tool id="deseq2" name="DESeq2 Analysis" version="1.0.0">
-  <description>some text</description>
+<tool id="deseq2_res" name="deseq2 res" version="1.0.0">
+  <description>some description</description>
   <version_command>deseq2 -V</version_command>
   <command>Rscript deseq2.R</command>
-  <inputs check_values="True" method="get"/>
+  <requirements>
+    <requirement type="package" version="0.5"/>
+    <container type="docker"/>
+  </requirements>
+  <outputs>
+    <data name="data_1" hidden="false"/>
+    <data name="data_2" hidden="false"/>
+  </outputs>
+  <help>.. class:: warningmark&#xD;
+&#xD;
+'''TIP''' This tool requires *fasta* format.&#xD;
+&#xD;
+----&#xD;
+&#xD;
+'''Example'''&#xD;
+&#xD;
+Query sequence::&#xD;
+    &gt;seq1&#xD;
+    ATCG...&#xD;
+&#xD;
+.. image:: my_figure.png&#xD;
+    :height: 500&#xD;
+    :width: 600</help>
 </tool>