# HG changeset patch
# User mingchen0919
# Date 1507140303 14400
# Node ID f0b7e87a8df2232dfe90dabf9af6860dcba21e79
# Parent  f7d987ad71034d3b3554608fa74f976961e2a9c1
planemo upload

diff -r f7d987ad7103 -r f0b7e87a8df2 DESeq2.R
--- a/DESeq2.R	Tue Oct 03 23:59:18 2017 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,3 +0,0 @@
-library(DESeq2)
-
-x = 1:100
\ No newline at end of file
diff -r f7d987ad7103 -r f0b7e87a8df2 deseq2.xml
--- a/deseq2.xml	Tue Oct 03 23:59:18 2017 -0400
+++ b/deseq2.xml	Wed Oct 04 14:05:03 2017 -0400
@@ -1,6 +1,28 @@
-<tool id="deseq2" name="DESeq2 Analysis" version="1.0.0">
-  <description>some text</description>
+<tool id="deseq2_res" name="deseq2 res" version="1.0.0">
+  <description>some description</description>
   <version_command>deseq2 -V</version_command>
   <command>Rscript deseq2.R</command>
-  <inputs check_values="True" method="get"/>
+  <requirements>
+    <requirement type="package" version="0.5"/>
+    <container type="docker"/>
+  </requirements>
+  <outputs>
+    <data name="data_1" hidden="false"/>
+    <data name="data_2" hidden="false"/>
+  </outputs>
+  <help>.. class:: warningmark&#xD;
+&#xD;
+'''TIP''' This tool requires *fasta* format.&#xD;
+&#xD;
+----&#xD;
+&#xD;
+'''Example'''&#xD;
+&#xD;
+Query sequence::&#xD;
+    &gt;seq1&#xD;
+    ATCG...&#xD;
+&#xD;
+.. image:: my_figure.png&#xD;
+    :height: 500&#xD;
+    :width: 600</help>
 </tool>