Mercurial > repos > mingchen0919 > rmarkdown_fastq_dump

changeset 10:057a6b742899 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/statonlab/docker-GRReport/tree/master/my_tools/rmarkdown_fastq_dump commit 5d2a63708a8abf73432c1d6863d970146c6a38b2-dirty
author mingchen0919
date Wed, 27 Sep 2017 16:17:40 -0400
parents 233210d44681
children d4a9c31d0046
files fastq_dump_se.xml
diffstat 1 files changed, 4 insertions(+), 12 deletions(-) [+]
line wrap: on
line diff
--- a/fastq_dump_se.xml	Wed Sep 27 16:16:12 2017 -0400
+++ b/fastq_dump_se.xml	Wed Sep 27 16:17:40 2017 -0400
@@ -12,18 +12,10 @@
         collection.
     </description>
     <stdio>
-        <regex match="Execution halted"
-               source="both"
-               level="fatal"
-               description="Execution halted." />
-        <regex match="Error in"
-               source="both"
-               level="fatal"
-               description="An undefined error occured, please check your intput carefully and contact your administrator." />
-        <regex match="Fatal error"
-               source="both"
-               level="fatal"
-               description="An undefined error occured, please check your intput carefully and contact your administrator." />
+        <regex match="XXX"
+               source="stderr"
+               level="warning"
+               description="Check the warnings_and_errors.txt file for more details." />
     </stdio>
     <command>
         <![CDATA[