# HG changeset patch
# User mingchen0919
# Date 1506543460 14400
# Node ID 057a6b74289931be7832d740b30d0eb4cd90058e
# Parent  233210d4468120afc17248846a59bebcf5f06c8a
planemo upload for repository https://github.com/statonlab/docker-GRReport/tree/master/my_tools/rmarkdown_fastq_dump commit 5d2a63708a8abf73432c1d6863d970146c6a38b2-dirty

diff -r 233210d44681 -r 057a6b742899 fastq_dump_se.xml
--- a/fastq_dump_se.xml	Wed Sep 27 16:16:12 2017 -0400
+++ b/fastq_dump_se.xml	Wed Sep 27 16:17:40 2017 -0400
@@ -12,18 +12,10 @@
         collection.
     </description>
     <stdio>
-        <regex match="Execution halted"
-               source="both"
-               level="fatal"
-               description="Execution halted." />
-        <regex match="Error in"
-               source="both"
-               level="fatal"
-               description="An undefined error occured, please check your intput carefully and contact your administrator." />
-        <regex match="Fatal error"
-               source="both"
-               level="fatal"
-               description="An undefined error occured, please check your intput carefully and contact your administrator." />
+        <regex match="XXX"
+               source="stderr"
+               level="warning"
+               description="Check the warnings_and_errors.txt file for more details." />
     </stdio>
     <command>
         <![CDATA[