Mercurial > repos > mingchen0919 > rmarkdown_deseq2_count_matrix
annotate rmarkdown_deseq2_count_matrix.Rmd @ 0:867a77a7a380 draft
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| author | mingchen0919 |
|---|---|
| date | Fri, 29 Dec 2017 23:37:30 -0500 |
| parents | |
| children | 4a7131658ca6 |
| rev | line source |
|---|---|
| 0 | 1 --- |
| 2 title: 'DESeq2 analysis' | |
| 3 output: | |
| 4 html_document: | |
| 5 number_sections: true | |
| 6 toc: true | |
| 7 theme: cosmo | |
| 8 highlight: tango | |
| 9 --- | |
| 10 | |
| 11 ```{r setup, include=FALSE, warning=FALSE, message=FALSE} | |
| 12 knitr::opts_chunk$set( | |
| 13 echo = opt$echo, | |
| 14 error = TRUE | |
| 15 ) | |
| 16 ``` | |
| 17 | |
| 18 | |
| 19 ## Count Matrix | |
| 20 | |
| 21 ```{r 'count matrix'} | |
| 22 count_matrix = read.table(opt$count_matrix) | |
| 23 count_matrix | |
| 24 ``` | |
| 25 | |
| 26 ```{r 'ste[ 2'} | |
| 27 | |
| 28 ``` | |
| 29 | |
| 30 |