comparison rmarkdown_deseq2_count_matrix.Rmd @ 0:867a77a7a380 draft

planemo upload
author mingchen0919
date Fri, 29 Dec 2017 23:37:30 -0500
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children 4a7131658ca6
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-1:000000000000 0:867a77a7a380
1 ---
2 title: 'DESeq2 analysis'
3 output:
4 html_document:
5 number_sections: true
6 toc: true
7 theme: cosmo
8 highlight: tango
9 ---
10
11 ```{r setup, include=FALSE, warning=FALSE, message=FALSE}
12 knitr::opts_chunk$set(
13 echo = opt$echo,
14 error = TRUE
15 )
16 ```
17
18
19 ## Count Matrix
20
21 ```{r 'count matrix'}
22 count_matrix = read.table(opt$count_matrix)
23 count_matrix
24 ```
25
26 ```{r 'ste[ 2'}
27
28 ```
29
30