Mercurial > repos > mingchen0919 > aurora_star

changeset 4:5fabc85515ff draft

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add samtools
author mingchen0919
date Sun, 04 Mar 2018 01:37:25 -0500
parents 75a55316ff32
children 0ed708869995
files star.Rmd
diffstat 1 files changed, 1 insertions(+), 3 deletions(-) [+]
line wrap: on
line diff
--- a/star.Rmd	Sun Mar 04 00:59:59 2018 -0500
+++ b/star.Rmd	Sun Mar 04 01:37:25 2018 -0500
@@ -74,9 +74,7 @@
 ```{bash}
 cd ${X_d}
 samtools view \
-  -b Aligned.out.sam \
-  -h \
-  -o Aligned.out.bam
+  -bS Aligned.out.sam > Aligned.out.bam
   
 samtools sort \
   -o Aligned.out.sorted.bam \