# HG changeset patch
# User mingchen0919
# Date 1520145445 18000
# Node ID 5fabc85515ffc898fe2f6b5408fe116fe7c5709a
# Parent  75a55316ff323d652b52bdd38f4fba2925cc2fa8
add samtools

diff -r 75a55316ff32 -r 5fabc85515ff star.Rmd
--- a/star.Rmd	Sun Mar 04 00:59:59 2018 -0500
+++ b/star.Rmd	Sun Mar 04 01:37:25 2018 -0500
@@ -74,9 +74,7 @@
 ```{bash}
 cd ${X_d}
 samtools view \
-  -b Aligned.out.sam \
-  -h \
-  -o Aligned.out.bam
+  -bS Aligned.out.sam > Aligned.out.bam
   
 samtools sort \
   -o Aligned.out.sorted.bam \