Mercurial > repos > mingchen0919 > aurora_skewer
changeset 16:8ae4b7a00bf7 draft
planemo upload commit 118eae99517c14144a10412569bda8d05195a7fc-dirty
| author | mingchen0919 |
|---|---|
| date | Thu, 29 Nov 2018 20:21:48 -0500 |
| parents | 5742297bcb88 |
| children | 7c792cf4a5cf |
| files | rmarkdown_report.Rmd rmarkdown_report.xml |
| diffstat | 2 files changed, 2 insertions(+), 2 deletions(-) [+] |
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--- a/rmarkdown_report.Rmd Thu Nov 29 20:09:23 2018 -0500 +++ b/rmarkdown_report.Rmd Thu Nov 29 20:21:48 2018 -0500 @@ -82,14 +82,13 @@ ## Length distribution of reads after trimming -```{r echo=TRUE} +```{r echo=TRUE, message=FALSE, warning=FALSE} start_line = grep('length count percentage', log) len_dist = log[(start_line):length(log)] len_dist = do.call(rbind, strsplit(len_dist, '\t')) columns = len_dist[1, ] len_dist = as.data.frame(len_dist[-1, ]) colnames(len_dist) = columns -# knitr::kable(len_dist) library(plotly) library(ggplot2)
--- a/rmarkdown_report.xml Thu Nov 29 20:09:23 2018 -0500 +++ b/rmarkdown_report.xml Thu Nov 29 20:21:48 2018 -0500 @@ -6,6 +6,7 @@ <requirement type="package" version="1.20.0">r-getopt</requirement> <requirement type="package" version="1.6">r-rmarkdown</requirement> <requirement type="package" version="0.2.2">skewer</requirement> + <requirement type="package" version="4.5.6">r-plotly</requirement> </requirements> <command><![CDATA[