# HG changeset patch
# User mingchen0919
# Date 1543540908 18000
# Node ID 8ae4b7a00bf762fc978ec5eea3b72fcf06c64e61
# Parent  5742297bcb88b5f43546598521dc86818d1509fb
planemo upload commit 118eae99517c14144a10412569bda8d05195a7fc-dirty

diff -r 5742297bcb88 -r 8ae4b7a00bf7 rmarkdown_report.Rmd
--- a/rmarkdown_report.Rmd	Thu Nov 29 20:09:23 2018 -0500
+++ b/rmarkdown_report.Rmd	Thu Nov 29 20:21:48 2018 -0500
@@ -82,14 +82,13 @@
 
 ## Length distribution of reads after trimming
 
-```{r echo=TRUE}
+```{r echo=TRUE, message=FALSE, warning=FALSE}
 start_line = grep('length	count	percentage', log)
 len_dist = log[(start_line):length(log)]
 len_dist = do.call(rbind, strsplit(len_dist, '\t'))
 columns = len_dist[1, ]
 len_dist = as.data.frame(len_dist[-1, ])
 colnames(len_dist) = columns
-# knitr::kable(len_dist)
 
 library(plotly)
 library(ggplot2)
diff -r 5742297bcb88 -r 8ae4b7a00bf7 rmarkdown_report.xml
--- a/rmarkdown_report.xml	Thu Nov 29 20:09:23 2018 -0500
+++ b/rmarkdown_report.xml	Thu Nov 29 20:21:48 2018 -0500
@@ -6,6 +6,7 @@
         <requirement type="package" version="1.20.0">r-getopt</requirement>
         <requirement type="package" version="1.6">r-rmarkdown</requirement>
         <requirement type="package" version="0.2.2">skewer</requirement>
+        <requirement type="package" version="4.5.6">r-plotly</requirement>
     </requirements>
     <command><![CDATA[