Mercurial > repos > mingchen0919 > aurora_skewer

annotate expose-outputs.sh @ 6:5b07e567864b draft

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planemo upload commit ee93fa730d90ffc1a895a849bdcb6050ed5ad2c9-dirty
author mingchen0919
date Wed, 25 Apr 2018 17:20:11 -0400
parents 2c663ddb8488
children c5c297020c36
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2c663ddb8488 planemo upload commit f0ae5255b6c75f69c85319bba8da742be83f27d2-dirty
mingchen0919
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1 # change directory to tool outputs directory
2c663ddb8488 planemo upload commit f0ae5255b6c75f69c85319bba8da742be83f27d2-dirty
mingchen0919
parents:
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2 cd ${REPORT_FILES_PATH}
2c663ddb8488 planemo upload commit f0ae5255b6c75f69c85319bba8da742be83f27d2-dirty
mingchen0919
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2c663ddb8488 planemo upload commit f0ae5255b6c75f69c85319bba8da742be83f27d2-dirty
mingchen0919
parents:
diff changeset
4 # copy outputs from tool outputs directory to corresponding galaxy output path
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5b07e567864b planemo upload commit ee93fa730d90ffc1a895a849bdcb6050ed5ad2c9-dirty
mingchen0919
parents: 5
diff changeset
5 cp star.html ${REPORT}
5b07e567864b planemo upload commit ee93fa730d90ffc1a895a849bdcb6050ed5ad2c9-dirty
mingchen0919
parents: 5
diff changeset
6 cp Aligned.out.sorted.bam ${X_S}