comparison expose-outputs.sh @ 6:5b07e567864b draft

planemo upload commit ee93fa730d90ffc1a895a849bdcb6050ed5ad2c9-dirty

5:2c663ddb8488

# change directory to tool outputs directory
cd ${REPORT_FILES_PATH}

# copy outputs from tool outputs directory to corresponding galaxy output path
cp skewer.html ${REPORT}

if [ -e trim-trimmed-pair1.fastq ]; then
  cp trim-trimmed-pair1.fastq ${X_1}
fi

if [ -e trim-trimmed-pair2.fastq ]; then
  cp trim-trimmed-pair2.fastq ${X_2}
fi

if [ -e trim-trimmed.fastq ]; then
  cp trim-trimmed.fastq ${X_3}
fi

6:5b07e567864b

# change directory to tool outputs directory
cd ${REPORT_FILES_PATH}

# copy outputs from tool outputs directory to corresponding galaxy output path
cp star.html ${REPORT}
cp Aligned.out.sorted.bam ${X_S}