Mercurial > repos > mingchen0919 > aurora_htseq_site

changeset 3:6e69c93fe491 draft

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fix error
author mingchen0919
date Tue, 13 Mar 2018 10:09:13 -0400
parents fad3864136c9
children b3e5f4753856
files htseq_count_site.Rmd
diffstat 1 files changed, 1 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/htseq_count_site.Rmd	Tue Mar 13 09:49:58 2018 -0400
+++ b/htseq_count_site.Rmd	Tue Mar 13 10:09:13 2018 -0400
@@ -47,7 +47,7 @@
 ## Counts
 
 ```{r}
-count_data = read.table(paste0(opt$X_d, '/counts.txt'), row.names = 1)
+count_data = read.table(opt$X_c, row.names = 1)
 sample_names = trimws(strsplit(opt$X_B, ',')[[1]])
 colnames(count_data) = rep(sample_names, length = ncol(count_data))
 DT::datatable(count_data, caption = "htseq counts for each sample")