# HG changeset patch
# User mingchen0919
# Date 1520950153 14400
# Node ID 6e69c93fe491ab5401e8226430d792d8b59d301c
# Parent  fad3864136c93c0d9ad3aed5666ccedcc4e7bf3c
fix error

diff -r fad3864136c9 -r 6e69c93fe491 htseq_count_site.Rmd
--- a/htseq_count_site.Rmd	Tue Mar 13 09:49:58 2018 -0400
+++ b/htseq_count_site.Rmd	Tue Mar 13 10:09:13 2018 -0400
@@ -47,7 +47,7 @@
 ## Counts
 
 ```{r}
-count_data = read.table(paste0(opt$X_d, '/counts.txt'), row.names = 1)
+count_data = read.table(opt$X_c, row.names = 1)
 sample_names = trimws(strsplit(opt$X_B, ',')[[1]])
 colnames(count_data) = rep(sample_names, length = ncol(count_data))
 DT::datatable(count_data, caption = "htseq counts for each sample")