Mercurial > repos > mingchen0919 > aurora_htseq_site
annotate htseq_count.sh @ 0:0bfeaf18a871 draft
planemo upload
| author | mingchen0919 |
|---|---|
| date | Wed, 07 Mar 2018 08:45:02 -0500 |
| parents | |
| children |
| rev | line source |
|---|---|
| 0 | 1 Rscript '${__tool_directory__}/htseq_count_render.R' |
| 2 | |
| 3 -e $echo | |
| 4 -o $report | |
| 5 -d $report.files_path | |
| 6 -s $sink_message | |
| 7 -t '${__tool_directory__}' | |
| 8 | |
| 9 -A '$alignment_files' | |
| 10 -B '$sample_names' | |
| 11 -G $gff | |
| 12 -f $format | |
| 13 -r $order | |
| 14 -S $stranded | |
| 15 -a $minaqual | |
| 16 -T $feature_type | |
| 17 -i $idattr | |
| 18 -m $mode | |
| 19 -c $count | |
| 20 -O $count_rdata |